Browse Element(s) Details


OsAffx.4175.1.S1_at

Description tigr:9632.m05301
TID=OsAffx.4175.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5455011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g54500OsAffx.26601.1.S1_x_at11/114+32200502..32204838polI-like DNA polymerase, putative, expressed
LOC_Os04g54500Os.26908.1.A1_at11/114+32200502..32204838polI-like DNA polymerase, putative, expressed
LOC_Os04g54500OsAffx.26601.1.S1_at8/114+32200502..32204838polI-like DNA polymerase, putative, expressed
LOC_Os04g54510Os.55496.1.S1_at10/114+32205197..32206501mTERF family protein, expressed
LOC_Os04g54510OsAffx.30059.1.S1_x_at1/114+32205197..32206501mTERF family protein, expressed
LOC_Os04g54520Os.43567.1.S1_x_at1/114+32210964..32213616retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g54530NANA4+32216915..32218487Zinc knuckle family protein
LOC_Os04g54540NANA4+32219518..32220413hypothetical protein
LOC_Os04g54550OsAffx.4175.1.S1_at11/114+32226334..32226864expressed protein
LOC_Os04g54560Os.49525.1.S1_at8/114+32229429..32231261Transferase family protein, expressed
LOC_Os04g54564Os.53855.1.S1_at11/114+32231463..32232743expressed protein
LOC_Os04g54570Os.49525.1.S1_at1/114+32234201..32236150Transferase family protein
LOC_Os04g54580OsAffx.26603.1.S1_at11/114+32237998..32238579hypothetical protein
LOC_Os04g54590Os.5585.1.S1_at11/114+32240544..32241434expressed protein
LOC_Os04g54600Os.4938.1.S1_at11/114+32245869..32246997uncharacterized plant-specific domain TIGR01570 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4175.1.S1_at--987--8031Chr04:32226810..32226834 (25 bp)
GGAGTCAGCCATGTCGCTGTACCGG
LOC_Os04g54550
OsAffx.4175.1.S1_at--745--4131Chr04:32226776..32226800 (25 bp)
CGCTGCCGACGGAGCCGATGAAGCT
LOC_Os04g54550
OsAffx.4175.1.S1_at--621--1671Chr04:32226764..32226788 (25 bp)
AGCCGATGAAGCTCACCGCGACGGA
LOC_Os04g54550
OsAffx.4175.1.S1_at--717--891Chr04:32226740..32226764 (25 bp)
AGGCGCTGTGGCTACGCATCCCGGT
LOC_Os04g54550
OsAffx.4175.1.S1_at--418--7531Chr04:32226733..32226757 (25 bp)
GTGGCTACGCATCCCGGTCCTGCAA
LOC_Os04g54550
OsAffx.4175.1.S1_at--1115--3831Chr04:32226714..32226738 (25 bp)
CTGCAACACGTCCTATTCTACGAGA
LOC_Os04g54550
OsAffx.4175.1.S1_at--391--2471Chr04:32226710..32226734 (25 bp)
AACACGTCCTATTCTACGAGAGCGC
LOC_Os04g54550
OsAffx.4175.1.S1_at--997--10211Chr04:32226701..32226725 (25 bp)
TATTCTACGAGAGCGCCGGCAGCAG
LOC_Os04g54550
OsAffx.4175.1.S1_at--792--4211Chr04:32226467..32226491 (25 bp)
CCGACGACGACCTGCGGTTGCTGGA
LOC_Os04g54550
OsAffx.4175.1.S1_at--400--1871Chr04:32226461..32226485 (25 bp)
ACGACCTGCGGTTGCTGGAGCAGCT
LOC_Os04g54550
OsAffx.4175.1.S1_at--68--8891Chr04:32226398..32226422 (25 bp)
TGATGGCCGTGCAGTCCACGCGTCT
LOC_Os04g54550
Target Sequence 
GGAGTCAGCCATGTCGCTGTACCGGCGAAGGCTGCGCTGCCGACGGAGCCGATGAAGCTCACCGCGACGGAGGCGCTGTG
GCTACGCATCCCGGTCCTGCAACACGTCCTATTCTACGAGAGCGCCGGCAGCAGCTGGCCGCCGTTCGACGGCATCGTCG
ACTCGCTCCGGTCCTCCCTCGGCGCGACGCTGGCGACCTTCGCCCCGCTCGCCGGCAGGCTCGTCCACCTCGAGGACACC
GGCGACGTCGCCATCGTCTGCTCGGCCTCGGACGCGGTGAGGTTCGTGGAGGCGGAGTGCGACGCCGACGTCCGCAGCGT
CGCGGGCGGCGGCGGCGACGCGCCCGACGACGACCTGCGGTTGCTGGAGCAGCTCGCCCCGGAGCTCGACATGGGCGAGC
TGCCGACGTCGGTGATGGCCGTGCAGTCCACGCGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4175.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis