Browse Element(s) Details


OsAffx.26601.1.S1_at

Description tigr:9632.m05296
TID=OsAffx.26601.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to PolI-like DNA polymerase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g545008/11polI-like DNA polymerase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g54450Os.53253.1.S1_at1/114+32175769..32180046retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g54450Os.26738.1.S1_at1/114+32175769..32180046retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g54460OsAffx.26599.1.S1_at11/114+32182419..32182725hypothetical protein
LOC_Os04g54474Os.27178.1.S1_s_at11/114+32184292..32192973Transcription factor TGA4, putative, expressed
LOC_Os04g54490OsAffx.14413.1.S1_at11/114+32195786..32196548hypothetical protein
LOC_Os04g54500OsAffx.26601.1.S1_x_at11/114+32200502..32204838polI-like DNA polymerase, putative, expressed
LOC_Os04g54500Os.26908.1.A1_at11/114+32200502..32204838polI-like DNA polymerase, putative, expressed
LOC_Os04g54500OsAffx.26601.1.S1_at8/114+32200502..32204838polI-like DNA polymerase, putative, expressed
LOC_Os04g54510Os.55496.1.S1_at10/114+32205197..32206501mTERF family protein, expressed
LOC_Os04g54510OsAffx.30059.1.S1_x_at1/114+32205197..32206501mTERF family protein, expressed
LOC_Os04g54520Os.43567.1.S1_x_at1/114+32210964..32213616retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g54530NANA4+32216915..32218487Zinc knuckle family protein
LOC_Os04g54540NANA4+32219518..32220413hypothetical protein
LOC_Os04g54550OsAffx.4175.1.S1_at11/114+32226334..32226864expressed protein
LOC_Os04g54560Os.49525.1.S1_at8/114+32229429..32231261Transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006260biological_processDNA replication
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0003677molecular_functionDNA binding
GO:0003887molecular_functionDNA-directed DNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26601.1.S1_at--867--7091Chr04:32203920..32203944 (25 bp)
GTCACATTGAGCGAGCTGCTATCAA
LOC_Os04g54500
OsAffx.26601.1.S1_at--861--9691Chr04:32203921..32203945 (25 bp)
TCACATTGAGCGAGCTGCTATCAAT
LOC_Os04g54500
OsAffx.26601.1.S1_at--856--3311Chr04:32203922..32203946 (25 bp)
CACATTGAGCGAGCTGCTATCAATG
LOC_Os04g54500
OsAffx.26601.1.S1_at--1015--2071Chr04:32203923..32203947 (25 bp)
ACATTGAGCGAGCTGCTATCAATGC
LOC_Os04g54500
OsAffx.26601.1.S1_at--548--3591Chr04:32203924..32203948 (25 bp)
CATTGAGCGAGCTGCTATCAATGCA
LOC_Os04g54500
OsAffx.26601.1.S1_at--967--51Chr04:32203925..32203949 (25 bp)
ATTGAGCGAGCTGCTATCAATGCAC
LOC_Os04g54500
OsAffx.26601.1.S1_at--708--10751Chr04:32203926..32203950 (25 bp)
TTGAGCGAGCTGCTATCAATGCACC
LOC_Os04g54500
OsAffx.26601.1.S1_at--971--8911Chr04:32203927..32203951 (25 bp)
TGAGCGAGCTGCTATCAATGCACCA
LOC_Os04g54500
Target Sequence 
GTCACATTGAGCGAGCTGCTATCAATGCACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26601.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis