Browse Element(s) Details


Os.53253.1.S1_at

Description gb:AK071597.1
DB_XREF= gi:32981620
TID=Os.53253.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53253 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023104P21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023104P21, full insert sequence.
FL= gb:AK071597.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0318011/11retrotransposon protein, putative, unclassified, expressed
LOC_Os04g544501/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g03150OsAffx.29006.2.S1_at11/118+1440908..1444149Protein kinase domain containing protein
LOC_Os08g03150Os.50872.1.S1_at4/118+1440908..1444149Protein kinase domain containing protein
LOC_Os08g03160OsAffx.29006.3.S1_x_at11/118+1447811..1450004lectin protein kinase, putative
LOC_Os08g03170Os.53070.1.S1_at11/118+1460003..1461829Protein kinase domain containing protein, expressed
LOC_Os08g03180Os.53253.1.S1_at11/118+1462078..1466880retrotransposon protein, putative, unclassified, expressed
LOC_Os08g03190OsAffx.29007.1.S1_at11/118+1466896..1467375Legume lectins beta domain containing protein
LOC_Os08g03200OsAffx.29006.1.S1_at1/118+1471193..1478565retrotransposon protein, putative, unclassified
LOC_Os08g03210OsAffx.20354.1.S1_at2/118+1484061..1486989retrotransposon protein, putative, unclassified
LOC_Os08g03220OsAffx.1646.1.S1_x_at1/118+1487320..1493442retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53253.1.S1_at--532--8371Chr08:1466366..1466390 (25 bp)
GGCGATCGCCTTGATGAAGAATCCT
LOC_Os08g03180
Os.53253.1.S1_at--766--5351Chr08:1466381..1466405 (25 bp)
GAAGAATCCTGTGTTCCACGGGAGG
LOC_Os08g03180
Os.53253.1.S1_at--249--10233Chr08:1466414..1466438 (25 bp)
TATTGATACCCGCTACCATTTCATT
LOC_Os08g03180
Os.53253.1.S1_at--959--5031Chr08:1466459..1466483 (25 bp)
GCAGATTCTGATTGAGTTCGTTCGT
LOC_Os08g03180
Os.53253.1.S1_at--346--3191Chr08:1466506..1466530 (25 bp)
CAATGACAAAGGGACTGCCGGCGGC
LOC_Os08g03180
Os.53253.1.S1_at--71--10851Chr08:1466556..1466580 (25 bp)
TTGGGTGTGCGTGATCTCAGGCCAC
LOC_Os08g03180
Os.53253.1.S1_at--698--1212Chr08:1466607..1466631 (25 bp)
AGTTATTCCTGGTGTGGCCCGAGCT
LOC_Os08g03180
Os.53253.1.S1_at--914--491Chr08:1466695..1466719 (25 bp)
ATCGGTGGCGACTAGTTCTTGCAGC
LOC_Os08g03180
Os.53253.1.S1_at--219--1752Chr08:1466759..1466783 (25 bp)
ACCTCGTCGTTTCCACATTTGTAGG
LOC_Os08g03180
Os.53253.1.S1_at--195--7052Chr08:1466815..1466839 (25 bp)
GTAACAGAATTTGTACGCGCGCATT
LOC_Os08g03180
Os.53253.1.S1_at--751--9952Chr08:1466828..1466852 (25 bp)
TACGCGCGCATTCAGTTTTCATTTC
LOC_Os08g03180
Target Sequence 
GGCGATCGCCTTGATGAAGAATCCTGTGTTCCACGGGAGGAGCAAGCATATTGATACCCGCTACCATTTCATTCGTGAAT
GTGTTGAGAGTGGGCAGATTCTGATTGAGTTCGTTCGTTCTGAGGAGCAGCGAGCAGATGCAATGACAAAGGGACTGCCG
GCGGCGAAGCTGGCGACTGCACGGCACCTGTTGGGTGTGCGTGATCTCAGGCCACGCCAAGACTAAGGGGGAGTATGTTG
CAGTTATTCCTGGTGTGGCCCGAGCTGATCCGGACGACGCGGGAATGCAACGGTGTGTAACGGTGTGGCGAGATGCCCGG
GCAAAGGAGATCGGTGGCGACTAGTTCTTGCAGCGCAGGAAGCGCGATGAAGCAGAGTGCATGACGGGGAGTAACCTCGT
CGTTTCCACATTTGTAGGATCAAAGTTGTTAGCCTATAAATAGTTGGTGGTAACAGAATTTGTACGCGCGCATTCAGTTT
TCATTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53253.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis