Browse Element(s) Details


Os.50872.1.S1_at

Description gb:AK059130.1
DB_XREF= gi:32969148
TID=Os.50872.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.50872 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013068L11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-022-G07, full insert sequence.
FL= gb:AK098961.1 gb:AK059130.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0302011/11Legume lectins beta domain containing protein, expressed
LOC_Os08g031504/11Protein kinase domain containing protein
LOC_Os08g031003/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g03010Os.45173.1.S1_x_at6/118+1319607..1326240retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g03010Os.45173.5.S1_x_at4/118+1319607..1326240retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g03020Os.50872.1.S1_at11/118+1334443..1337038Legume lectins beta domain containing protein, expressed
LOC_Os08g03020OsAffx.29006.3.S1_x_at6/118+1334443..1337038Legume lectins beta domain containing protein, expressed
LOC_Os08g03020OsAffx.29007.1.S1_at1/118+1334443..1337038Legume lectins beta domain containing protein, expressed
LOC_Os08g03030OsAffx.29006.1.S1_at10/118+1344344..1351636retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g03030OsAffx.21754.1.S1_x_at2/118+1344344..1351636retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g03040NANA8+1358627..1359473lectin protein kinase, putative
LOC_Os08g03050OsAffx.16800.1.S1_at11/118+1361372..1361578hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50872.1.S1_at--1104--10471Chr08:1334738..1334762 (25 bp)
TTACACCTCGCTAGGGTGGCAAGTT
LOC_Os08g03020
Os.50872.1.S1_at--346--7533Chr08:1334723..1334747 (25 bp)
GTGGCAAGTTTTCTCACTCATAGGA
LOC_Os08g03020
Os.50872.1.S1_at--477--6511Chr08:1334666..1334690 (25 bp)
GATTTTTATCCATACCCACAAGTCG
LOC_Os08g03020
Os.50872.1.S1_at--588--2131Chr08:1334649..1334673 (25 bp)
ACAAGTCGAACTACCTGCATCCCTA
LOC_Os08g03020
Os.50872.1.S1_at--626--1752Chr08:1334623..1334647 (25 bp)
ACCTCAGTTCCTTTCGCATACTTTA
LOC_Os08g03020
Os.50872.1.S1_at--271--3672Chr08:1447236..1447260 (25 bp)
CTTTCGCATACTTTAGCCGGTTTGA
NONE
Os.50872.1.S1_at--993--2873Chr08:1447212..1447236 (25 bp)
AAGGGCTCATCTTCGTTAATTGCTC
NONE
Os.50872.1.S1_at--19--6772Chr08:1334575..1334599 (25 bp)
GTTAATTGCTCCGTACAGTAGTATT
LOC_Os08g03020
Os.50872.1.S1_at--1106--7011Chr08:1334523..1334547 (25 bp)
GTACATTTACAAATTGCCGCTTGAA
LOC_Os08g03020
Os.50872.1.S1_at--1012--273Chr08:1334499..1334523 (25 bp)
ATAGGATGTACAGCTCGTGAGGCAA
LOC_Os08g03020
Os.50872.1.S1_at--385--7874Chr08:1447101..1447125 (25 bp)
GGTTTGCTCTTTAGAGAGCTGCCTA
NONE
Target Sequence 
TTACACCTCGCTAGGGTGGCAAGTTTTCTCACTCATAGGATATGTATAGCAAGACAACTTTTGTCATATCTAGATTTTTA
TCCATACCCACAAGTCGAACTACCTGCATCCCTACACCTCAGTTCCTTTCGCATACTTTAGCCGGTTTGAAGGGCTCATC
TTCGTTAATTGCTCCGTACAGTAGTATTAGCCATGTTTGGTTCATTTTACATGTTGTACATTTACAAATTGCCGCTTGAA
TAGGATGTACAGCTCGTGAGGCAATTGGTTTGCTCTTTAGAGAGCTGCCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50872.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis