Browse Element(s) Details


OsAffx.16800.1.S1_at

Description tigr:9636.m00212
TID=OsAffx.16800.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0305011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g03020Os.50872.1.S1_at11/118+1334443..1337038Legume lectins beta domain containing protein, expressed
LOC_Os08g03020OsAffx.29006.3.S1_x_at6/118+1334443..1337038Legume lectins beta domain containing protein, expressed
LOC_Os08g03020OsAffx.29007.1.S1_at1/118+1334443..1337038Legume lectins beta domain containing protein, expressed
LOC_Os08g03030OsAffx.29006.1.S1_at10/118+1344344..1351636retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g03030OsAffx.21754.1.S1_x_at2/118+1344344..1351636retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g03040NANA8+1358627..1359473lectin protein kinase, putative
LOC_Os08g03050OsAffx.16800.1.S1_at11/118+1361372..1361578hypothetical protein
LOC_Os08g03060NANA8+1362595..1362822hypothetical protein
LOC_Os08g03070Os.54803.1.S1_at11/118+1364705..1367435Legume lectins beta domain containing protein, expressed
LOC_Os08g03070OsAffx.29007.1.S1_at1/118+1364705..1367435Legume lectins beta domain containing protein, expressed
LOC_Os08g03080OsAffx.5689.1.S1_at10/118+1370733..1379852Zinc knuckle family protein
LOC_Os08g03080OsAffx.9652.1.S1_x_at1/118+1370733..1379852Zinc knuckle family protein
LOC_Os08g03090NANA8+1385439..1387438Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16800.1.S1_at--1134--8451Chr08:1361418..1361442 (25 bp)
TGGCCTCGGGAGCTGTAGGGACATC
LOC_Os08g03050
OsAffx.16800.1.S1_at--1039--8751Chr08:1361431..1361455 (25 bp)
TGTAGGGACATCTGGCAGCGATGCC
LOC_Os08g03050
OsAffx.16800.1.S1_at--629--8131Chr08:1361436..1361460 (25 bp)
GGACATCTGGCAGCGATGCCGACAA
LOC_Os08g03050
OsAffx.16800.1.S1_at--776--591Chr08:1361451..1361475 (25 bp)
ATGCCGACAACGGCGTCGGATCCGG
LOC_Os08g03050
OsAffx.16800.1.S1_at--48--10851Chr08:1361479..1361503 (25 bp)
TTGGGACCTCGGCAGTGATGACAAA
LOC_Os08g03050
OsAffx.16800.1.S1_at--877--5831Chr08:1361483..1361507 (25 bp)
GACCTCGGCAGTGATGACAAAGACA
LOC_Os08g03050
OsAffx.16800.1.S1_at--720--5611Chr08:1361498..1361522 (25 bp)
GACAAAGACATGGATCTGGCACTTG
LOC_Os08g03050
OsAffx.16800.1.S1_at--1077--2111Chr08:1361505..1361529 (25 bp)
ACATGGATCTGGCACTTGGGAGCTC
LOC_Os08g03050
OsAffx.16800.1.S1_at--1154--6391Chr08:1361510..1361534 (25 bp)
GATCTGGCACTTGGGAGCTCGTCGA
LOC_Os08g03050
OsAffx.16800.1.S1_at--15--9471Chr08:1361512..1361536 (25 bp)
TCTGGCACTTGGGAGCTCGTCGATG
LOC_Os08g03050
OsAffx.16800.1.S1_at--61--5911Chr08:1361524..1361548 (25 bp)
GAGCTCGTCGATGGCAATGTCGGCC
LOC_Os08g03050
Target Sequence 
TGGCCTCGGGAGCTGTAGGGACATCTGGCAGCGATGCCGACAACGGCGTCGGATCCGGCGCTTGGGACCTCGGCAGTGAT
GACAAAGACATGGATCTGGCACTTGGGAGCTCGTCGATGGCAATGTCGGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16800.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis