Browse Element(s) Details


OsAffx.29006.3.S1_x_at

Description tigr:9636.m00224
TID=OsAffx.29006.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to lectin-like protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0316011/11lectin protein kinase, putative
LOC_Os08g030206/11Legume lectins beta domain containing protein, expressed
LOC_Os08g031001/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g03130NANA8+1424427..1431151retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g03140NANA8+1434338..1435579retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g03150OsAffx.29006.2.S1_at11/118+1440908..1444149Protein kinase domain containing protein
LOC_Os08g03150Os.50872.1.S1_at4/118+1440908..1444149Protein kinase domain containing protein
LOC_Os08g03160OsAffx.29006.3.S1_x_at11/118+1447811..1450004lectin protein kinase, putative
LOC_Os08g03170Os.53070.1.S1_at11/118+1460003..1461829Protein kinase domain containing protein, expressed
LOC_Os08g03180Os.53253.1.S1_at11/118+1462078..1466880retrotransposon protein, putative, unclassified, expressed
LOC_Os08g03190OsAffx.29007.1.S1_at11/118+1466896..1467375Legume lectins beta domain containing protein
LOC_Os08g03200OsAffx.29006.1.S1_at1/118+1471193..1478565retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29006.3.S1_x_at--105--9653Chr08:1448266..1448290 (25 bp)
TCAGGGACGCCAGGCTATCTTGATC
LOC_Os08g03160
OsAffx.29006.3.S1_x_at--330--5172Chr08:1448218..1448242 (25 bp)
GCAAGCGCTGAGTCTGATGTCTATA
LOC_Os08g03160
OsAffx.29006.3.S1_x_at--241--10192Chr08:1448088..1448112 (25 bp)
TATATGGCCAGGGAGTCGTTCTCAA
LOC_Os08g03160
OsAffx.29006.3.S1_x_at--295--9731Chr08:1448067..1448091 (25 bp)
TCAAGGCTGCAGACGAGCGGCTCAA
LOC_Os08g03160
OsAffx.29006.3.S1_x_at--64--5711Chr08:1448038..1448062 (25 bp)
GACTATGACGCAACCAGCATGGAGT
LOC_Os08g03160
OsAffx.29006.3.S1_x_at--117--9471Chr08:1447995..1448019 (25 bp)
TCTGGTGTGTGCATCCGGACCGATA
LOC_Os08g03160
OsAffx.29006.3.S1_x_at--893--311Chr08:1447973..1447997 (25 bp)
ATACGCGCGTCCATCTATCAGAGCT
LOC_Os08g03160
OsAffx.29006.3.S1_x_at--952--10152Chr08:1447958..1447982 (25 bp)
TATCAGAGCTGCCATGACGGTCCTC
LOC_Os08g03160
OsAffx.29006.3.S1_x_at--665--3032Chr08:1447932..1447956 (25 bp)
AATCCAATGGACCACTACCAGTGTT
LOC_Os08g03160
OsAffx.29006.3.S1_x_at--670--1111Chr08:1447913..1447937 (25 bp)
AGTGTTACCATCCAAGATGCCCGTG
LOC_Os08g03160
OsAffx.29006.3.S1_x_at--52--7612Chr08:1447855..1447879 (25 bp)
GGGCAACTTTCATCATCGACAGGAA
LOC_Os08g03160
Target Sequence 
TCAGGGACGCCAGGCTATCTTGATCCTGAATGTGTGATCACAGGTAAAGCAAGCGCTGAGTCTGATGTCTATAGTTTTGG
CGTTGTTTTATTGGAAGTGGCATGTGGGAGGAGACCAATGAGCCTACTGGACAACCAGAACAATAGCCTCTTCCGACTGG
TGGAATGGGTCTGGGACCTATATGGCCAGGGAGTCGTTCTCAAGGCTGCAGACGAGCGGCTCAACAATGACTATGACGCA
ACCAGCATGGAGTGTGTCATGGCCGTTGGGCTCTGGTGTGTGCATCCGGACCGATACGCGCGTCCATCTATCAGAGCTGC
CATGACGGTCCTCCAATCCAATGGACCACTACCAGTGTTACCATCCAAGATGCCCGTGCCAACATATGCACCGCCTATGG
CCTCGTCGGAGGGGCAACTTTCATCATCGACAGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29006.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis