Browse Element(s) Details


Os.54803.1.S1_at

Description gb:AK106798.1
DB_XREF= gi:32992007
TID=Os.54803.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54803 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-116-B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-116-B08, full insert sequence.
FL= gb:AK106798.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0307011/11Legume lectins beta domain containing protein, expressed
LOC_Os08g032402/11Protein kinase domain containing protein
LOC_Os08g029961/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g03030OsAffx.29006.1.S1_at10/118+1344344..1351636retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g03030OsAffx.21754.1.S1_x_at2/118+1344344..1351636retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g03040NANA8+1358627..1359473lectin protein kinase, putative
LOC_Os08g03050OsAffx.16800.1.S1_at11/118+1361372..1361578hypothetical protein
LOC_Os08g03060NANA8+1362595..1362822hypothetical protein
LOC_Os08g03070Os.54803.1.S1_at11/118+1364705..1367435Legume lectins beta domain containing protein, expressed
LOC_Os08g03070OsAffx.29007.1.S1_at1/118+1364705..1367435Legume lectins beta domain containing protein, expressed
LOC_Os08g03080OsAffx.5689.1.S1_at10/118+1370733..1379852Zinc knuckle family protein
LOC_Os08g03080OsAffx.9652.1.S1_x_at1/118+1370733..1379852Zinc knuckle family protein
LOC_Os08g03090NANA8+1385439..1387438Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54803.1.S1_at--1075--1611Chr08:1365267..1365291 (25 bp)
AGCGGCTCAACGGTGATTACGACGT
LOC_Os08g03070
Os.54803.1.S1_at--870--2671Chr08:1365188..1365212 (25 bp)
AAGCGCATGACCATCTATCCGAGCA
LOC_Os08g03070
Os.54803.1.S1_at--682--4432Chr08:1365157..1365181 (25 bp)
GCCATGCTCCAGTCTAGTGGGCAAT
LOC_Os08g03070
Os.54803.1.S1_at--1036--1091Chr08:1365142..1365166 (25 bp)
AGTGGGCAATTACCGGTGTTACCTG
LOC_Os08g03070
Os.54803.1.S1_at--334--7431Chr08:1365127..1365151 (25 bp)
GTGTTACCTGCTAAGATGCCTGTGC
LOC_Os08g03070
Os.54803.1.S1_at--304--8211Chr08:1365049..1365073 (25 bp)
GGAATGTCGTCCTCAAGTGCAGCAC
LOC_Os08g03070
Os.54803.1.S1_at--1129--7331Chr08:1365033..1365057 (25 bp)
GTGCAGCACAATCATCATCGACGAC
LOC_Os08g03070
Os.54803.1.S1_at--370--3794Chr08:1497709..1497733 (25 bp)
CTCGTCTTCGTTGCTCAAACATCAA
LOC_Os08g03240
Os.54803.1.S1_at--45--5292Chr08:1497632..1497656 (25 bp)
GAATGGGATGTACAACTCGTGAGCC
NONE
Os.54803.1.S1_at--250--2011Chr08:1364854..1364878 (25 bp)
ACTCGTGAGCCATTGATTTTCCATT
LOC_Os08g03070
Os.54803.1.S1_at--162--192Chr08:1364742..1364766 (25 bp)
ATTTATCCTGCCATTTTCTCTTCAA
LOC_Os08g03070
Target Sequence 
AGCGGCTCAACGGTGATTACGACGTGTCAGAGATGGAGCGTGTCATCGTTGTGGGGCTTTGGTGTGCGCATCCAGACCCA
AGCGCATGACCATCTATCCGAGCAGCCATGGCCATGCTCCAGTCTAGTGGGCAATTACCGGTGTTACCTGCTAAGATGCC
TGTGCCAACATATGCGCCGCCAGTGGCCTCAGTGGAGGGGCTCTTCACATCGTCCACTGGAATGTCGTCCTCAAGTGCAG
CACAATCATCATCGACGACCAGTGGCTACATCACTCACACCTCGAGTTCCTCTAACACATCCACTTCAGCTGGTTCAAAG
GACTCGTCTTCGTTGCTCAAACATCAATACTTATGATGTTCAATTCATTTGCTTTGTTACTAATTTTGACTTGATGCTTG
AATGGGATGTACAACTCGTGAGCCATTGATTTTCCATTTAGAGTAGTCTAATTGCCAATGTGAGTAATGCATGTGCATTT
ATGCCATGATTTAAATTTTACTCCCATTTTAGTTTTTCTAGATAGATTTATCCTGCCATTTTCTCTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54803.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis