Browse Element(s) Details


Os.27178.1.S1_s_at

Description gb:AK066906.1
DB_XREF= gi:32976924
TID=Os.27178.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27178 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033059P06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013091P09, full insert sequence.
FL= gb:AK066906.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5447411/11Transcription factor TGA4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g54420Os.11291.1.S1_at11/114+32159641..32162964expressed protein
LOC_Os04g54430Os.12125.1.S1_at11/114+32164845..32168038expressed protein
LOC_Os04g54440Os.49165.1.S1_at11/114+32169375..32173421RNA recognition motif family protein, expressed
LOC_Os04g54440Os.49165.1.S2_at10/114+32169375..32173421RNA recognition motif family protein, expressed
LOC_Os04g54450Os.53253.1.S1_at1/114+32175769..32180046retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g54450Os.26738.1.S1_at1/114+32175769..32180046retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g54460OsAffx.26599.1.S1_at11/114+32182419..32182725hypothetical protein
LOC_Os04g54474Os.27178.1.S1_s_at11/114+32184292..32192973Transcription factor TGA4, putative, expressed
LOC_Os04g54490OsAffx.14413.1.S1_at11/114+32195786..32196548hypothetical protein
LOC_Os04g54500OsAffx.26601.1.S1_x_at11/114+32200502..32204838polI-like DNA polymerase, putative, expressed
LOC_Os04g54500Os.26908.1.A1_at11/114+32200502..32204838polI-like DNA polymerase, putative, expressed
LOC_Os04g54500OsAffx.26601.1.S1_at8/114+32200502..32204838polI-like DNA polymerase, putative, expressed
LOC_Os04g54510Os.55496.1.S1_at10/114+32205197..32206501mTERF family protein, expressed
LOC_Os04g54510OsAffx.30059.1.S1_x_at1/114+32205197..32206501mTERF family protein, expressed
LOC_Os04g54520Os.43567.1.S1_x_at1/114+32210964..32213616retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g54530NANA4+32216915..32218487Zinc knuckle family protein

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27178.1.S1_s_at--552--3651Chr04:32192559..32192583 (25 bp)
CTTCAGTGTCAGGTCAATGGCCAGT
LOC_Os04g54474
Os.27178.1.S1_s_at--951--8991Chr04:32192590..32192614 (25 bp)
TGAAGAGATCTTTCTACCTGTGCTT
LOC_Os04g54474
Os.27178.1.S1_s_at--1028--10311Chr04:32192600..32192624 (25 bp)
TTTCTACCTGTGCTTCGTCGAAGAA
LOC_Os04g54474
Os.27178.1.S1_s_at--843--5371Chr04:32192619..32192643 (25 bp)
GAAGAAGAACAACTCGTGATCGACT
LOC_Os04g54474
Os.27178.1.S1_s_at--1126--4511Chr04:32192653..32192677 (25 bp)
GCCGCTGCAACTGCAATCCAAGGAA
LOC_Os04g54474
Os.27178.1.S1_s_at--436--8211Chr04:32192674..32192698 (25 bp)
GGAATGGTGTATGTTCGCCTGCTGA
LOC_Os04g54474
Os.27178.1.S1_s_at--3--6931Chr04:32192682..32192706 (25 bp)
GTATGTTCGCCTGCTGAGATGAAGA
LOC_Os04g54474
Os.27178.1.S1_s_at--305--2111Chr04:32192778..32192802 (25 bp)
ACATGTTTTGGGTATCATTGCCAGA
LOC_Os04g54474
Os.27178.1.S1_s_at--941--9451Chr04:32192842..32192866 (25 bp)
TCTGTAACTAGTGTTGCTCGGTTCC
LOC_Os04g54474
Os.27178.1.S1_s_at--531--9231Chr04:32192867..32192891 (25 bp)
TCCTCCCTAGTACGGCAGACATAGG
LOC_Os04g54474
Os.27178.1.S1_s_at--1049--5671Chr04:32192884..32192908 (25 bp)
GACATAGGTGACATACTGCCATTGT
LOC_Os04g54474
Target Sequence 
CTTCAGTGTCAGGTCAATGGCCAGTGAAGGATGAAGAGATCTTTCTACCTGTGCTTCGTCGAAGAAGAACAACTCGTGAT
CGACTTTTTGCAGCGCCGCTGCAACTGCAATCCAAGGAATGGTGTATGTTCGCCTGCTGAGATGAAGAAATAACCAAAAT
TAACTTTGGTCTTTNTGATGTGGGCACAAGAGAAGATGTAATATAATATGTAAATATATACATGTTTTGGGTATCATTGC
CAGAGGCCTCTACAGCTGGTTTTATAGACATGTGATGTAATTATCTGTAACTAGTGTTGCTCGGTTCCTCCTCCCTAGTA
CGGCAGACATAGGTGACATACTGCCATTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27178.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis