Browse Element(s) Details


OsAffx.26599.1.S1_at

Description tigr:9632.m05292
TID=OsAffx.26599.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5446011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g54410Os.10044.1.S2_at11/114+32151405..32159199expressed protein
LOC_Os04g54410Os.10044.1.S1_at11/114+32151405..32159199expressed protein
LOC_Os04g54420Os.11291.1.S1_at11/114+32159641..32162964expressed protein
LOC_Os04g54430Os.12125.1.S1_at11/114+32164845..32168038expressed protein
LOC_Os04g54440Os.49165.1.S1_at11/114+32169375..32173421RNA recognition motif family protein, expressed
LOC_Os04g54440Os.49165.1.S2_at10/114+32169375..32173421RNA recognition motif family protein, expressed
LOC_Os04g54450Os.53253.1.S1_at1/114+32175769..32180046retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g54450Os.26738.1.S1_at1/114+32175769..32180046retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g54460OsAffx.26599.1.S1_at11/114+32182419..32182725hypothetical protein
LOC_Os04g54474Os.27178.1.S1_s_at11/114+32184292..32192973Transcription factor TGA4, putative, expressed
LOC_Os04g54490OsAffx.14413.1.S1_at11/114+32195786..32196548hypothetical protein
LOC_Os04g54500OsAffx.26601.1.S1_x_at11/114+32200502..32204838polI-like DNA polymerase, putative, expressed
LOC_Os04g54500Os.26908.1.A1_at11/114+32200502..32204838polI-like DNA polymerase, putative, expressed
LOC_Os04g54500OsAffx.26601.1.S1_at8/114+32200502..32204838polI-like DNA polymerase, putative, expressed
LOC_Os04g54510Os.55496.1.S1_at10/114+32205197..32206501mTERF family protein, expressed
LOC_Os04g54510OsAffx.30059.1.S1_x_at1/114+32205197..32206501mTERF family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26599.1.S1_at--445--6511Chr04:32182452..32182476 (25 bp)
GATATTAGCGGCGATACGTTATACC
LOC_Os04g54460
OsAffx.26599.1.S1_at--1055--4671Chr04:32182459..32182483 (25 bp)
GCGGCGATACGTTATACCTTAGTGT
LOC_Os04g54460
OsAffx.26599.1.S1_at--935--6471Chr04:32182464..32182488 (25 bp)
GATACGTTATACCTTAGTGTCAATT
LOC_Os04g54460
OsAffx.26599.1.S1_at--200--1111Chr04:32182479..32182503 (25 bp)
AGTGTCAATTACTTTGGCACCAATC
LOC_Os04g54460
OsAffx.26599.1.S1_at--110--10231Chr04:32182491..32182627 (25 bp)
TTTGGCACCAATCCTTGGACTTACA
LOC_Os04g54460
OsAffx.26599.1.S1_at--625--571Chr04:32182501..32182637 (25 bp)
ATCCTTGGACTTACATGGACCGTCG
LOC_Os04g54460
OsAffx.26599.1.S1_at--625--9851Chr04:32182624..32182648 (25 bp)
TACATGGACCGTCGAGGTCAACGCT
LOC_Os04g54460
OsAffx.26599.1.S1_at--729--7071Chr04:32182640..32182664 (25 bp)
GTCAACGCTTGGAAACATCGGCCGC
LOC_Os04g54460
OsAffx.26599.1.S1_at--422--2511Chr04:32182653..32182677 (25 bp)
AACATCGGCCGCCAATGCAGATGCT
LOC_Os04g54460
OsAffx.26599.1.S1_at--977--3191Chr04:32182665..32182689 (25 bp)
CAATGCAGATGCTCCAGGTGCTTGG
LOC_Os04g54460
OsAffx.26599.1.S1_at--409--1291Chr04:32182671..32182695 (25 bp)
AGATGCTCCAGGTGCTTGGGTCTCG
LOC_Os04g54460
Target Sequence 
GATATTAGCGGCGATACGTTATACCTTAGTGTCAATTACTTTGGCACCAATCCTTGGACTTACATGGACCGTCGAGGTCA
ACGCTTGGAAACATCGGCCGCCAATGCAGATGCTCCAGGTGCTTGGGTCTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26599.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis