Browse Element(s) Details


OsAffx.14413.1.S1_at

Description tigr:9632.m05295
TID=OsAffx.14413.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5449011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g54440Os.49165.1.S1_at11/114+32169375..32173421RNA recognition motif family protein, expressed
LOC_Os04g54440Os.49165.1.S2_at10/114+32169375..32173421RNA recognition motif family protein, expressed
LOC_Os04g54450Os.53253.1.S1_at1/114+32175769..32180046retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g54450Os.26738.1.S1_at1/114+32175769..32180046retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g54460OsAffx.26599.1.S1_at11/114+32182419..32182725hypothetical protein
LOC_Os04g54474Os.27178.1.S1_s_at11/114+32184292..32192973Transcription factor TGA4, putative, expressed
LOC_Os04g54490OsAffx.14413.1.S1_at11/114+32195786..32196548hypothetical protein
LOC_Os04g54500OsAffx.26601.1.S1_x_at11/114+32200502..32204838polI-like DNA polymerase, putative, expressed
LOC_Os04g54500Os.26908.1.A1_at11/114+32200502..32204838polI-like DNA polymerase, putative, expressed
LOC_Os04g54500OsAffx.26601.1.S1_at8/114+32200502..32204838polI-like DNA polymerase, putative, expressed
LOC_Os04g54510Os.55496.1.S1_at10/114+32205197..32206501mTERF family protein, expressed
LOC_Os04g54510OsAffx.30059.1.S1_x_at1/114+32205197..32206501mTERF family protein, expressed
LOC_Os04g54520Os.43567.1.S1_x_at1/114+32210964..32213616retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g54530NANA4+32216915..32218487Zinc knuckle family protein
LOC_Os04g54540NANA4+32219518..32220413hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14413.1.S1_at--376--332Chr04:32195840..32195864 (25 bp)
ATACTCGCAGTCGTCCTGCTTCTTG
LOC_Os04g54490
OsAffx.14413.1.S1_at--169--4191Chr04:32196152..32196171 (20 bp)
CCCCTTTTCCACAGATGATGTAGTA
LOC_Os04g54490
OsAffx.14413.1.S1_at--660--6291Chr04:32196160..32196184 (25 bp)
GATGATGTAGTAACACCGGTGCATG
LOC_Os04g54490
OsAffx.14413.1.S1_at--802--10051Chr04:32196167..32196191 (25 bp)
TAGTAACACCGGTGCATGGTGCACA
LOC_Os04g54490
OsAffx.14413.1.S1_at--424--2771Chr04:32196191..32196215 (25 bp)
AAGACGAAAAGATCAGCGCTACTGC
LOC_Os04g54490
OsAffx.14413.1.S1_at--412--1651Chr04:32196205..32196229 (25 bp)
AGCGCTACTGCGACACTTGTGATCT
LOC_Os04g54490
OsAffx.14413.1.S1_at--168--5631Chr04:32196216..32196237 (22 bp)
GACACTTGTGATCTCACCACAGCAG
LOC_Os04g54490
OsAffx.14413.1.S1_at--144--7411Chr04:32196223..32196345 (25 bp)
GTGATCTCACCACAGCAGGCCACAG
LOC_Os04g54490
OsAffx.14413.1.S1_at--1144--3991Chr04:32196442..32196466 (25 bp)
CGTGCAACCGCGTCATGGTGAGCTT
LOC_Os04g54490
OsAffx.14413.1.S1_at--658--2611Chr04:32196447..32196471 (25 bp)
AACCGCGTCATGGTGAGCTTCAAGT
LOC_Os04g54490
OsAffx.14413.1.S1_at--274--3511Chr04:32196455..32196479 (25 bp)
CATGGTGAGCTTCAAGTGCTCCATC
LOC_Os04g54490
Target Sequence 
ATACTCGCAGTCGTCCTGCTTCTTGCTGCCACCGGCGATGGCATCAGATCGCCCCCCTTTTCCACAGATGATGTAGTAAC
ACCGGTGCATGGTGCACAAGACGAAAAGATCAGCGCTACTGCGACACTTGTGATCTCACCACAGCAGGCCACAGCTGGGG
ACAACGTCGGCCGCGGCGTCCTGCAGGAGGAGGTGCGCGCGACGGGGTCGAGCCTGCCGGACTGCTCGCACGCGTGCGGC
GCCTGCTCGCCGTGCAACCGCGTCATGGTGAGCTTCAAGTGCTCCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14413.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis