Browse Element(s) Details


Os.26908.1.A1_at

Description gb:AK065360.1
DB_XREF= gi:32975378
TID=Os.26908.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.26908 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013009A21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013009A21, full insert sequence.
FL= gb:AK065360.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5450011/11polI-like DNA polymerase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g54450Os.53253.1.S1_at1/114+32175769..32180046retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g54450Os.26738.1.S1_at1/114+32175769..32180046retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g54460OsAffx.26599.1.S1_at11/114+32182419..32182725hypothetical protein
LOC_Os04g54474Os.27178.1.S1_s_at11/114+32184292..32192973Transcription factor TGA4, putative, expressed
LOC_Os04g54490OsAffx.14413.1.S1_at11/114+32195786..32196548hypothetical protein
LOC_Os04g54500OsAffx.26601.1.S1_x_at11/114+32200502..32204838polI-like DNA polymerase, putative, expressed
LOC_Os04g54500Os.26908.1.A1_at11/114+32200502..32204838polI-like DNA polymerase, putative, expressed
LOC_Os04g54500OsAffx.26601.1.S1_at8/114+32200502..32204838polI-like DNA polymerase, putative, expressed
LOC_Os04g54510Os.55496.1.S1_at10/114+32205197..32206501mTERF family protein, expressed
LOC_Os04g54510OsAffx.30059.1.S1_x_at1/114+32205197..32206501mTERF family protein, expressed
LOC_Os04g54520Os.43567.1.S1_x_at1/114+32210964..32213616retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g54530NANA4+32216915..32218487Zinc knuckle family protein
LOC_Os04g54540NANA4+32219518..32220413hypothetical protein
LOC_Os04g54550OsAffx.4175.1.S1_at11/114+32226334..32226864expressed protein
LOC_Os04g54560Os.49525.1.S1_at8/114+32229429..32231261Transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006260biological_processDNA replication
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0003677molecular_functionDNA binding
GO:0003887molecular_functionDNA-directed DNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26908.1.A1_at--566--6671Chr04:32204468..32204492 (25 bp)
GTTGCATCTCGGGAGTGCTTCAAAC
LOC_Os04g54500
Os.26908.1.A1_at--310--1431Chr04:32204531..32204555 (25 bp)
AGAACAGAGGTTTGCCCTGGTGTCC
LOC_Os04g54500
Os.26908.1.A1_at--564--7451Chr04:32204550..32204574 (25 bp)
GTGTCCGGGAGGCATGCATAACCAT
LOC_Os04g54500
Os.26908.1.A1_at--213--9331Chr04:32204568..32204592 (25 bp)
TAACCATTCGGCTAACCAGGGCAAT
LOC_Os04g54500
Os.26908.1.A1_at--542--7171Chr04:32204598..32204622 (25 bp)
GTCTGCAGCGAAGGCACTGTACAAT
LOC_Os04g54500
Os.26908.1.A1_at--762--8331Chr04:32204626..32204650 (25 bp)
GGCTGAATAGCTTGACTTCCACATT
LOC_Os04g54500
Os.26908.1.A1_at--530--8951Chr04:32204638..32204662 (25 bp)
TGACTTCCACATTCTTCCAAGTAGG
LOC_Os04g54500
Os.26908.1.A1_at--19--5291Chr04:32204662..32204686 (25 bp)
GAATGTCATTTTTGTGTCACGTGTA
LOC_Os04g54500
Os.26908.1.A1_at--858--2031Chr04:32204726..32204750 (25 bp)
ACTAGGCATGCGTTGTTTATAAGAT
LOC_Os04g54500
Os.26908.1.A1_at--703--4731Chr04:32204782..32204806 (25 bp)
GCTGACCAATTCTGCTTATGTCTGA
LOC_Os04g54500
Os.26908.1.A1_at--146--10431Chr04:32204797..32204821 (25 bp)
TTATGTCTGACTCTGCTACTACACA
LOC_Os04g54500
Target Sequence 
GTTGCATCTCGGGAGTGCTTCAAACTCAACGATGAAATATGTTCTCAGCTGGTATGAGCTGCCAGAACAGAGGTTTGCCC
TGGTGTCCGGGAGGCATGCATAACCATTCGGCTAACCAGGGCAATGAGCAGTCTGCAGCGAAGGCACTGTACAATGTAGG
CTGAATAGCTTGACTTCCACATTCTTCCAAGTAGGAATGTCATTTTTGTGTCACGTGTAGTAATCTGGAGACTGGACTCT
TGGAGGGAAGTAGGAAAAACTAGGCATGCGTTGTTTATAAGATTTGTTTAGCATGCTGATGTAGNATTAGGTTAGCTGAC
CAATTCTGCTTATGTCTGACTCTGCTACTACACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26908.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis