Browse Element(s) Details


Os.49525.1.S1_at

Description gb:AK103592.1
DB_XREF= gi:32988801
TID=Os.49525.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49525 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033133D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033133D10, full insert sequence.
FL= gb:AK103592.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g545608/11Transferase family protein, expressed
LOC_Os04g545701/11Transferase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g54500OsAffx.26601.1.S1_x_at11/114+32200502..32204838polI-like DNA polymerase, putative, expressed
LOC_Os04g54500Os.26908.1.A1_at11/114+32200502..32204838polI-like DNA polymerase, putative, expressed
LOC_Os04g54500OsAffx.26601.1.S1_at8/114+32200502..32204838polI-like DNA polymerase, putative, expressed
LOC_Os04g54510Os.55496.1.S1_at10/114+32205197..32206501mTERF family protein, expressed
LOC_Os04g54510OsAffx.30059.1.S1_x_at1/114+32205197..32206501mTERF family protein, expressed
LOC_Os04g54520Os.43567.1.S1_x_at1/114+32210964..32213616retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g54530NANA4+32216915..32218487Zinc knuckle family protein
LOC_Os04g54540NANA4+32219518..32220413hypothetical protein
LOC_Os04g54550OsAffx.4175.1.S1_at11/114+32226334..32226864expressed protein
LOC_Os04g54560Os.49525.1.S1_at8/114+32229429..32231261Transferase family protein, expressed
LOC_Os04g54564Os.53855.1.S1_at11/114+32231463..32232743expressed protein
LOC_Os04g54570Os.49525.1.S1_at1/114+32234201..32236150Transferase family protein
LOC_Os04g54580OsAffx.26603.1.S1_at11/114+32237998..32238579hypothetical protein
LOC_Os04g54590Os.5585.1.S1_at11/114+32240544..32241434expressed protein
LOC_Os04g54600Os.4938.1.S1_at11/114+32245869..32246997uncharacterized plant-specific domain TIGR01570 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49525.1.S1_at--1055--3932Chr04:32234326..32234350 (25 bp)
CGGACGGAGCCGATCAGGATGAACC
LOC_Os04g54570
Os.49525.1.S1_at--648--7651Chr04:32229773..32229797 (25 bp)
GGGATGACAGATACATTCGATTAAT
LOC_Os04g54560
Os.49525.1.S1_at--273--9751Chr04:32229752..32229776 (25 bp)
TAATTATACTTCCTACTCCTCATTT
LOC_Os04g54560
Os.49525.1.S1_at--945--3632Chr10:9640220..9640251 (25 bp)
CTTCCTACTCCTCATTTTAAGTGCA
NONE
Os.49525.1.S1_at--990--8711Chr03:5677820..5677839 (20 bp)
TGTACCCAACTTTGACAGTCCGTTT
NONE
Os.49525.1.S1_at--577--2331Chr04:32229582..32229606 (25 bp)
AAAGACGTGCGTTCAAAGTTTGGCA
LOC_Os04g54560
Os.49525.1.S1_at--1137--5091NONE
GCACGGAAAATCATGGTTGCCCTTA
NONE
Os.49525.1.S1_at--789--3471NONE
CATGGTTGCCCTTAAATGGAACGGA
NONE
Os.49525.1.S1_at--706--8031Chr04:32229523..32229547 (25 bp)
GGAGTAGTAATTTTCGCTGCCATAT
LOC_Os04g54560
Os.49525.1.S1_at--456--171Chr04:32229514..32229538 (25 bp)
ATTTTCGCTGCCATATGGACGAGAG
LOC_Os04g54560
Os.49525.1.S1_at--956--3453Chr03:21406362..21406383 (22 bp)
CAGTGCTAAATGATGTGTTTCGTAA
NONE
Target Sequence 
CGGACGGAGCCGATCAGGATGAACCNCGACGGACAGGTGGCGCTGGTGCGCGCCAAGGACGGCCGCGCGGTGCAGGTNTC
GGTNTCCTTGCTCCGATNTGCACACATGCAAGGTTTCAAGTCNCAATTACTTGAGTTATTGGGATGACAGATACATTCGA
TTAATTATACTTCCTACTCCTCATTTTAAGTGCAACTATGAGTTTNTGTACCCAACTTTGACAGTCCGTTTTATTCAAAA
AAAATTTATAATTAGTATTTTTATTGTTATGAGATGATAAAATATAAATAGTACTTTATACGGGACTTATTTTTTTTATT
TTTTTTTCAAAAAAGACGTGCGTTCAAAGTTTGGCACGGAAAATCATGGTTGCCCTTAAATGGAACGGAGGGAGTAGTAA
TTTTCGCTGCCATATGGACGAGAGAGAGAGAGAGAGCATGTTTAATGAACAGTGCTAAATGATGTGTTTCGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49525.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis