Browse Element(s) Details


Os.53855.1.S1_at

Description gb:AK100418.1
DB_XREF= gi:32985627
TID=Os.53855.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53855 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023088A15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023088A15, full insert sequence.
FL= gb:AK100418.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5456411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g54510Os.55496.1.S1_at10/114+32205197..32206501mTERF family protein, expressed
LOC_Os04g54510OsAffx.30059.1.S1_x_at1/114+32205197..32206501mTERF family protein, expressed
LOC_Os04g54520Os.43567.1.S1_x_at1/114+32210964..32213616retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g54530NANA4+32216915..32218487Zinc knuckle family protein
LOC_Os04g54540NANA4+32219518..32220413hypothetical protein
LOC_Os04g54550OsAffx.4175.1.S1_at11/114+32226334..32226864expressed protein
LOC_Os04g54560Os.49525.1.S1_at8/114+32229429..32231261Transferase family protein, expressed
LOC_Os04g54564Os.53855.1.S1_at11/114+32231463..32232743expressed protein
LOC_Os04g54570Os.49525.1.S1_at1/114+32234201..32236150Transferase family protein
LOC_Os04g54580OsAffx.26603.1.S1_at11/114+32237998..32238579hypothetical protein
LOC_Os04g54590Os.5585.1.S1_at11/114+32240544..32241434expressed protein
LOC_Os04g54600Os.4938.1.S1_at11/114+32245869..32246997uncharacterized plant-specific domain TIGR01570 family protein, expressed
LOC_Os04g54610Os.11471.1.S1_at8/114+32257548..32258515hypothetical protein
LOC_Os04g54610OsAffx.26604.1.S1_at5/114+32257548..32258515hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53855.1.S1_at--588--6031Chr04:32232210..32232234 (25 bp)
GAGATGGTAGCAGCGATCCTCTCTC
LOC_Os04g54564
Os.53855.1.S1_at--1038--3311Chr04:32232245..32232269 (25 bp)
CACTTCCGCTGTTTTTTGCGTGTAA
LOC_Os04g54564
Os.53855.1.S1_at--646--5931Chr04:32232296..32232320 (25 bp)
GAGCAGCTAGCAGCCGGCAATAATT
LOC_Os04g54564
Os.53855.1.S1_at--397--1911Chr04:32232327..32232351 (25 bp)
ACGTGAATCGTTGGCTAATTGCGGA
LOC_Os04g54564
Os.53855.1.S1_at--882--3011Chr04:32232362..32232386 (25 bp)
AATGCGAGCGTTACTAGCTCCGTGC
LOC_Os04g54564
Os.53855.1.S1_at--1067--5511Chr04:32232418..32232442 (25 bp)
GAAAATGGCATCTGTCGGCACCAAA
LOC_Os04g54564
Os.53855.1.S1_at--41--8251Chr04:32232434..32232458 (25 bp)
GGCACCAAATCACGTGTCTACACGT
LOC_Os04g54564
Os.53855.1.S1_at--1054--8651Chr04:32232470..32232494 (25 bp)
TGTGCAATCTCACGGTAGTACCCTG
LOC_Os04g54564
Os.53855.1.S1_at--931--1171Chr04:32232486..32232510 (25 bp)
AGTACCCTGAGATATGCTACCGTAA
LOC_Os04g54564
Os.53855.1.S1_at--146--2611Chr04:32232562..32232586 (25 bp)
AACGCGATGCTGGTTTGTCCTAGAC
LOC_Os04g54564
Os.53855.1.S1_at--140--451Chr04:32232597..32232621 (25 bp)
AGCTAGGACGTCATTTAACGCCGTA
LOC_Os04g54564
Target Sequence 
GAGATGGTAGCAGCGATCCTCTCTCCCGCCTGCGACACTTCCGCTGTTTTTTGCGTGTAAACACAGCAGCAACTGGAGCC
ACGGAGGAGCAGCTAGCAGCCGGCAATAATTAGCCATACGTGAATCGTTGGCTAATTGCGGAATTAAATATTAATGCGAG
CGTTACTAGCTCCGTGCAAGGGGTGTCCTTGTCGAAGGCGAAATGTAGGAAAATGGCATCTGTCGGCACCAAATCACGTG
TCTACACGTTGAACACGTTATGTGCAATCTCACGGTAGTACCCTGAGATATGCTACCGTAAGAAGTTGTAAGATAATATC
GAACCAACAAACGGAAAAGCCCTATTAGAGGGAACGCGATGCTGGTTTGTCCTAGACTCGACAAATCAGCTAGGACGTCA
TTTAACGCCGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53855.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis