Browse Element(s) Details


Os.49165.1.S2_at

Description gb:AK119286.1
DB_XREF= gi:37988909
TID=Os.49165.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49165 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033037I12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-130-C12, full insert sequence.
FL= gb:AK058405.1 gb:AK119286.1 gb:AK065789.1 gb:AK101408.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5444010/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g54390Os.33674.1.S1_at11/114+32143944..32145970S1/P1 Nuclease family protein, expressed
LOC_Os04g54400Os.56266.1.S1_at11/114+32146617..32150894transposon protein, putative, Mutator sub-class, expressed
LOC_Os04g54400OsAffx.22607.1.S1_at1/114+32146617..32150894transposon protein, putative, Mutator sub-class, expressed
LOC_Os04g54410Os.10044.1.S2_at11/114+32151405..32159199expressed protein
LOC_Os04g54410Os.10044.1.S1_at11/114+32151405..32159199expressed protein
LOC_Os04g54420Os.11291.1.S1_at11/114+32159641..32162964expressed protein
LOC_Os04g54430Os.12125.1.S1_at11/114+32164845..32168038expressed protein
LOC_Os04g54440Os.49165.1.S1_at11/114+32169375..32173421RNA recognition motif family protein, expressed
LOC_Os04g54440Os.49165.1.S2_at10/114+32169375..32173421RNA recognition motif family protein, expressed
LOC_Os04g54450Os.53253.1.S1_at1/114+32175769..32180046retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g54450Os.26738.1.S1_at1/114+32175769..32180046retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g54460OsAffx.26599.1.S1_at11/114+32182419..32182725hypothetical protein
LOC_Os04g54474Os.27178.1.S1_s_at11/114+32184292..32192973Transcription factor TGA4, putative, expressed
LOC_Os04g54490OsAffx.14413.1.S1_at11/114+32195786..32196548hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009738biological_processabscisic acid mediated signaling
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49165.1.S2_at--549--10031Chr04:32170581..32170605 (25 bp)
TAGAGTCGCAACAACTATGCCCATC
LOC_Os04g54440
Os.49165.1.S2_at--144--10051Chr04:32170547..32170571 (25 bp)
TAGATCTGATTTTCAAAGTTGCCCC
LOC_Os04g54440
Os.49165.1.S2_at--174--10811Chr04:32170425..32170449 (25 bp)
TTGTCACTAGCTAGAATTTGCGCAT
LOC_Os04g54440
Os.49165.1.S2_at--321--8891Chr04:32170380..32170404 (25 bp)
TGAGGTCTCCGTAAGTTTGCTACAT
LOC_Os04g54440
Os.49165.1.S2_at--667--6852Chr04:32170366..32170390 (25 bp)
GTTTGCTACATATCATTTCCCTGTT
LOC_Os04g54440
Os.49165.1.S2_at--861--191Chr04:32170352..32170376 (25 bp)
ATTTCCCTGTTATTTTCCATGTCAT
LOC_Os04g54440
Os.49165.1.S2_at--22--3271Chr04:32170303..32170327 (25 bp)
CAACTTTCACGTTTTGTCTGGTACA
LOC_Os04g54440
Os.49165.1.S2_at--76--10171NONE
TATAGGCACCATTCTTGTTACAAAT
NONE
Os.49165.1.S2_at--469--6531Chr04:32170141..32170165 (25 bp)
GATTTCCTTAGTATCATCTTTCTTG
LOC_Os04g54440
Os.49165.1.S2_at--830--5051Chr04:32170077..32170101 (25 bp)
GCAGCAGAGACGACCAGTTATTATT
LOC_Os04g54440
Os.49165.1.S2_at--417--231Chr04:32170017..32170041 (25 bp)
ATATTGCTTTATATCTGGCAGTCAC
LOC_Os04g54440
Target Sequence 
TAGAGTCGCAACAACTATGCCCATCCATCAGATGTAGATCTGATTTTCAAAGTTGCCCCCCTTTCCAAATTTGTCACAAA
ACCATCTAGTTTCAAGGCTTACAACAGTAGATCAAGCACACCAAATGGCTTTACATTGCTAAATGTCGTGAAGTTATTGT
CACTAGCTAGAATTTGCGCATGATGAAGTTACAGAGACTATTGAGGTCTCCGTAAGTTTGCTACATATCATTTCCCTGTT
ATTTTCCATGTCATGGAAGAAATCTCCATCTAATTGATCAACTTTCACGTTTTGTCTGGTACAACTAAATTTTTGTTGTG
AGAACTCGATTAGTCAATTATAGGCACCATTCTTGTTACAAATGAACATAATCTTTCATATGTGGTGGTAAAAATCTTTA
CAATATAATCATTACTGCTGAATTGTTGTTTATATTGTTGGATTTCCTTAGTATCATCTTTCTTGAAATGGATTTTTTTT
TGTTTCTTCTAGTTGTGTATACTGGCAGCAGAGACGACCAGTTATTATTTGATGATGATTACATACTTCATGTATCCAAT
GGGTATATTGCTTTATATCTGGCAGTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49165.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis