Browse Element(s) Details


OsAffx.22607.1.S1_at

Description gb:NM_185373.1
DB_XREF= gi:34897831
TID=OsAffx.22607.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0514G12.36 (P0514G12.36), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g544001/11transposon protein, putative, Mutator sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g54330Os.10971.1.S1_at11/114+32120595..32123359N-terminal acetyltransferase complex ARD1 subunit homolog, putative, expressed
LOC_Os04g54330Os.10971.1.S1_a_at11/114+32120595..32123359N-terminal acetyltransferase complex ARD1 subunit homolog, putative, expressed
LOC_Os04g54330Os.10971.2.S1_at11/114+32120595..32123359N-terminal acetyltransferase complex ARD1 subunit homolog, putative, expressed
LOC_Os04g54340Os.53037.1.S1_at11/114+32123528..32129355Double-strand break repair protein MRE11, putative, expressed
LOC_Os04g54350Os.4845.1.S1_at8/114+32129344..32132785SPRY domain containing protein, expressed
LOC_Os04g54360Os.5910.1.S1_at11/114+32134421..32136977Glycosyl transferase family 8 protein, expressed
LOC_Os04g54370Os.54152.1.S1_at7/114+32137092..32139691expressed protein
LOC_Os04g54380Os.57400.1.S1_at11/114+32140701..32143586aluminum resistance protein homolog, putative
LOC_Os04g54390Os.33674.1.S1_at11/114+32143944..32145970S1/P1 Nuclease family protein, expressed
LOC_Os04g54400Os.56266.1.S1_at11/114+32146617..32150894transposon protein, putative, Mutator sub-class, expressed
LOC_Os04g54400OsAffx.22607.1.S1_at1/114+32146617..32150894transposon protein, putative, Mutator sub-class, expressed
LOC_Os04g54410Os.10044.1.S2_at11/114+32151405..32159199expressed protein
LOC_Os04g54410Os.10044.1.S1_at11/114+32151405..32159199expressed protein
LOC_Os04g54420Os.11291.1.S1_at11/114+32159641..32162964expressed protein
LOC_Os04g54430Os.12125.1.S1_at11/114+32164845..32168038expressed protein
LOC_Os04g54440Os.49165.1.S1_at11/114+32169375..32173421RNA recognition motif family protein, expressed
LOC_Os04g54440Os.49165.1.S2_at10/114+32169375..32173421RNA recognition motif family protein, expressed
LOC_Os04g54450Os.53253.1.S1_at1/114+32175769..32180046retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g54450Os.26738.1.S1_at1/114+32175769..32180046retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22607.1.S1_at--1085--2231Chr06:575316..575340 (25 bp)
AAATTGGCATTGTCGCGTGCAACGC
NONE
OsAffx.22607.1.S1_at--528--2611Chr06:575336..575360 (25 bp)
AACGCCATCACGGTGGTTGTATCGT
NONE
OsAffx.22607.1.S1_at--563--1911Chr06:575345..575369 (25 bp)
ACGGTGGTTGTATCGTCGAGCTCCA
NONE
OsAffx.22607.1.S1_at--607--9371Chr06:575360..575384 (25 bp)
TCGAGCTCCACCGACAAAGGTGTGA
NONE
OsAffx.22607.1.S1_at--706--2891Chr06:575376..575400 (25 bp)
AAGGTGTGAATGGATCCGGCCTTCC
NONE
OsAffx.22607.1.S1_at--524--7971Chr06:575387..575411 (25 bp)
GGATCCGGCCTTCCTTATGACGGAT
NONE
OsAffx.22607.1.S1_at--584--10431Chr06:575401..575425 (25 bp)
TTATGACGGATCCAGGCCACACCAG
NONE
OsAffx.22607.1.S1_at--848--7551Chr06:575472..575496 (25 bp)
GGGCCTACTGTAACGATCCGCCTCT
NONE
OsAffx.22607.1.S1_at--422--50527Chr12:14278610..14278846 (25 bp)
GCAGCTTTCATAGGCCGGGATGTTA
NONE
OsAffx.22607.1.S1_at--1044--7651Chr06:576573..576597 (25 bp)
GGGATGTTACACCTACCAATGCCAG
NONE
OsAffx.22607.1.S1_at--780--3191Chr06:576589..576613 (25 bp)
CAATGCCAGATCTAACGGTCCCGAG
NONE
Target Sequence 
AAATTGGCATTGTCGCGTGCAACGCCATCACGGTGGTTGTATCGTCGAGCTCCACCGACAAAGGTGTGAATGGATCCGGC
CTTCCTTATGACGGATCCAGGCCACACCAGGCCGCAACCCTCCTCTTCGCACTCGTCGCCAAGCCATCTGCCATCGGGGC
CTACTGTAACGATCCGCCTCTCCCAGGCCGGGTCCACTTACATCTGGCAGCTTTCATAGGCCGGGATGTTACACCTACCA
ATGCCAGATCTAACGGTCCCGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22607.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis