Browse Element(s) Details

Os.10971.2.S1_at

Description

gb:AK120021.1
DB_XREF= gi:37989644
TID=Os.10971.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10971 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-038-E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-186-C03, full insert sequence.
FL= gb:AK120021.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os04g54330	11/11	N-terminal acetyltransferase complex ARD1 subunit homolog, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os04g54270	NA	NA	4	+	32095550..32098786	transposon protein, putative, unclassified
LOC_Os04g54280	Os.27639.1.S1_x_at	8/11	4	+	32100580..32104684	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g54280	Os.53731.1.S1_at	3/11	4	+	32100580..32104684	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g54280	Os.9913.1.S1_at	2/11	4	+	32100580..32104684	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g54300	Os.6764.2.S1_at	10/11	4	+	32112432..32114924	wound induced protein, putative, expressed
LOC_Os04g54300	Os.7705.1.S1_at	9/11	4	+	32112432..32114924	wound induced protein, putative, expressed
LOC_Os04g54310	OsAffx.14412.1.S1_at	11/11	4	+	32117280..32118805	hypothetical protein
LOC_Os04g54310	Os.6764.1.S1_at	9/11	4	+	32117280..32118805	hypothetical protein
LOC_Os04g54310	Os.39998.1.A1_x_at	9/11	4	+	32117280..32118805	hypothetical protein
LOC_Os04g54310	Os.39998.1.A1_at	8/11	4	+	32117280..32118805	hypothetical protein
LOC_Os04g54320	Os.7707.1.S1_at	11/11	4	+	32119350..32120467	expressed protein
LOC_Os04g54330	Os.10971.1.S1_at	11/11	4	+	32120595..32123359	N-terminal acetyltransferase complex ARD1 subunit homolog, putative, expressed
LOC_Os04g54330	Os.10971.1.S1_a_at	11/11	4	+	32120595..32123359	N-terminal acetyltransferase complex ARD1 subunit homolog, putative, expressed
LOC_Os04g54330	Os.10971.2.S1_at	11/11	4	+	32120595..32123359	N-terminal acetyltransferase complex ARD1 subunit homolog, putative, expressed
LOC_Os04g54340	Os.53037.1.S1_at	11/11	4	+	32123528..32129355	Double-strand break repair protein MRE11, putative, expressed
LOC_Os04g54350	Os.4845.1.S1_at	8/11	4	+	32129344..32132785	SPRY domain containing protein, expressed
LOC_Os04g54360	Os.5910.1.S1_at	11/11	4	+	32134421..32136977	Glycosyl transferase family 8 protein, expressed
LOC_Os04g54370	Os.54152.1.S1_at	7/11	4	+	32137092..32139691	expressed protein
LOC_Os04g54380	Os.57400.1.S1_at	11/11	4	+	32140701..32143586	aluminum resistance protein homolog, putative
LOC_Os04g54390	Os.33674.1.S1_at	11/11	4	+	32143944..32145970	S1/P1 Nuclease family protein, expressed
LOC_Os04g54400	Os.56266.1.S1_at	11/11	4	+	32146617..32150894	transposon protein, putative, Mutator sub-class, expressed
LOC_Os04g54400	OsAffx.22607.1.S1_at	1/11	4	+	32146617..32150894	transposon protein, putative, Mutator sub-class, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0008152	biological_process	metabolism
GO:0005737	cellular_component	cytoplasm
GO:0008080	molecular_function	N-acetyltransferase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.10971.2.S1_at--49--135	1	Chr04:32122142..32122166 (25 bp)	AGAGTTGCCCAATGTGTGAGATGTA	LOC_Os04g54330
Os.10971.2.S1_at--677--693	1	Chr04:32122120..32122144 (25 bp)	GTAGGTAGCTTCAAGGGCCTGTTTT	LOC_Os04g54330
Os.10971.2.S1_at--746--1073	1	Chr04:32122006..32122030 (25 bp)	TTGAATTGTAACTCGCTTTTGTAGC	LOC_Os04g54330
Os.10971.2.S1_at--504--413	1	Chr04:32121993..32122017 (25 bp)	CGCTTTTGTAGCCATAGTCTTGTAT	LOC_Os04g54330
Os.10971.2.S1_at--167--79	1	Chr04:32121938..32121962 (25 bp)	ATGTGACCTATGATGCAGTGCCCAA	LOC_Os04g54330
Os.10971.2.S1_at--276--131	1	Chr04:32121907..32121931 (25 bp)	AGATGTAGGTTTCTCCAAGTCCCTG	LOC_Os04g54330
Os.10971.2.S1_at--372--683	1	Chr04:32121899..32121923 (25 bp)	GTTTCTCCAAGTCCCTGTTAGTCAG	LOC_Os04g54330
Os.10971.2.S1_at--820--863	1	Chr04:32121834..32121858 (25 bp)	TGGGCTGTTACTGAGGTCTGAACCT	LOC_Os04g54330
Os.10971.2.S1_at--844--543	1	Chr04:32121815..32121839 (25 bp)	GAACCTACTTGTTGGTACTCCTATT	LOC_Os04g54330
Os.10971.2.S1_at--730--229	1	Chr04:32121701..32121725 (25 bp)	AAATGGATGCCCTGTGGACTCAAGT	LOC_Os04g54330
Os.10971.2.S1_at--1156--541	1	Chr04:32121662..32121895 (25 bp)	GAACCTACTTGGCAAATCAGTGGAT	LOC_Os04g54330

Target Sequence

AGAGTTGCCCAATGTGTGAGATGTAGGTAGCTTCAAGGGCCTGTTTTTCAGGTTTGAACCTACTTGGGGTCCTACATTGT
AATGAGTTATATGGGCTTTTTAAACTGAAGTCTACTATTAAGTAGCTCATGATTTTTTGAATTGTAACTCGCTTTTGTAG
CCATAGTCTTGTATGTAAGAGAAGATATTTTAGATGGTAATAGAATGTGACCTATGATGCAGTGCCCAAAATGTGAGATG
TAGGTTTCTCCAAGTCCCTGTTAGTCAGGGAGAACCTACTTGGGGGGCCTACATTATAATGAGATTAATGGGCTGTTACT
GAGGTCTGAACCTACTTGTTGGTACTCCTATTTGTTACAAGTTTTTACTGAGCATTATTACTTGATAGAGATGTATTCAA
ACTTATGTTCATGTTTTTTGCGAATGATGATATTGGCTGCAAAATGGATGCCCTGTGGACTCAAGTNCCTGGTTCAAGGA
GAACCTACTTGGCAAATCAGTGGAT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis