Browse Element(s) Details


Os.33674.1.S1_at

Description gb:AK061848.1
DB_XREF= gi:32971866
TID=Os.33674.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33674 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013035J20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-040-F04, full insert sequence.
FL= gb:AK061848.1 gb:AK099573.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5439011/11S1/P1 Nuclease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g54320Os.7707.1.S1_at11/114+32119350..32120467expressed protein
LOC_Os04g54330Os.10971.1.S1_at11/114+32120595..32123359N-terminal acetyltransferase complex ARD1 subunit homolog, putative, expressed
LOC_Os04g54330Os.10971.1.S1_a_at11/114+32120595..32123359N-terminal acetyltransferase complex ARD1 subunit homolog, putative, expressed
LOC_Os04g54330Os.10971.2.S1_at11/114+32120595..32123359N-terminal acetyltransferase complex ARD1 subunit homolog, putative, expressed
LOC_Os04g54340Os.53037.1.S1_at11/114+32123528..32129355Double-strand break repair protein MRE11, putative, expressed
LOC_Os04g54350Os.4845.1.S1_at8/114+32129344..32132785SPRY domain containing protein, expressed
LOC_Os04g54360Os.5910.1.S1_at11/114+32134421..32136977Glycosyl transferase family 8 protein, expressed
LOC_Os04g54370Os.54152.1.S1_at7/114+32137092..32139691expressed protein
LOC_Os04g54380Os.57400.1.S1_at11/114+32140701..32143586aluminum resistance protein homolog, putative
LOC_Os04g54390Os.33674.1.S1_at11/114+32143944..32145970S1/P1 Nuclease family protein, expressed
LOC_Os04g54400Os.56266.1.S1_at11/114+32146617..32150894transposon protein, putative, Mutator sub-class, expressed
LOC_Os04g54400OsAffx.22607.1.S1_at1/114+32146617..32150894transposon protein, putative, Mutator sub-class, expressed
LOC_Os04g54410Os.10044.1.S2_at11/114+32151405..32159199expressed protein
LOC_Os04g54410Os.10044.1.S1_at11/114+32151405..32159199expressed protein
LOC_Os04g54420Os.11291.1.S1_at11/114+32159641..32162964expressed protein
LOC_Os04g54430Os.12125.1.S1_at11/114+32164845..32168038expressed protein
LOC_Os04g54440Os.49165.1.S1_at11/114+32169375..32173421RNA recognition motif family protein, expressed
LOC_Os04g54440Os.49165.1.S2_at10/114+32169375..32173421RNA recognition motif family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006308biological_processDNA catabolism
GO:0048443biological_processstamen development
GO:0000014molecular_functionsingle-stranded DNA specific endodeoxyribonuclease activity
GO:0003676molecular_functionnucleic acid binding
GO:0004519molecular_functionendonuclease activity
GO:0016891molecular_functionendoribonuclease activity, producing 5'-phosphomonoesters
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33674.1.S1_at--1053--2291Chr04:32145089..32145113 (25 bp)
AAAGGACCTTGTGCACAACTTCACC
LOC_Os04g54390
Os.33674.1.S1_at--1128--8591Chr04:32145227..32145251 (25 bp)
TGGTCTGATGACGTATCCTCTTGGG
LOC_Os04g54390
Os.33674.1.S1_at--199--5991Chr04:32145252..32145276 (25 bp)
GAGACTGCGAGGATCTCCTGTCTTG
LOC_Os04g54390
Os.33674.1.S1_at--382--7131Chr04:32145271..32145400 (25 bp)
GTCTTGCTCAACCAAGTACGCTACA
LOC_Os04g54390
Os.33674.1.S1_at--739--2971Chr04:32145423..32145447 (25 bp)
AATGGGCGTACAACGATGTCCGTGA
LOC_Os04g54390
Os.33674.1.S1_at--520--6271Chr04:32145437..32145461 (25 bp)
GATGTCCGTGAAGGCGAAACTCTGT
LOC_Os04g54390
Os.33674.1.S1_at--599--6391Chr04:32145576..32145600 (25 bp)
GATCGTGACACGACGAATCGCGCAG
LOC_Os04g54390
Os.33674.1.S1_at--1062--10431Chr04:32145608..32145632 (25 bp)
TTAGGCTGGCCATGTTCTTGAATCG
LOC_Os04g54390
Os.33674.1.S1_at--518--4971Chr04:32145661..32145685 (25 bp)
GCATCACCAGCCTGAACTGATAGCT
LOC_Os04g54390
Os.33674.1.S1_at--344--4511Chr04:32145735..32145759 (25 bp)
GCCGCATCCATTTCATTTTATTTTT
LOC_Os04g54390
Os.33674.1.S1_at--88--2651Chr04:32145870..32145894 (25 bp)
AACCAATTCCATTCTTTTCTGATCA
LOC_Os04g54390
Target Sequence 
AAAGGACCTTGTGCACAACTTCACCACGGGAACGTGGTCTGATGACGTATCCTCTTGGGGAGACTGCGAGGATCTCCTGT
CTTGCTCAACCAAGTACGCTACAGAGAGCATAAATTTGGCTTGCAAATGGGCGTACAACGATGTCCGTGAAGGCGAAACT
CTGTCAGATGACTACTTCGGCTCACGGCTCCCGATCGTGACACGACGAATCGCGCAGGGGGGAGTTAGGCTGGCCATGTT
CTTGAATCGGCTCTTCGGGGAGCACAACCGTGACGTCGCATCACCAGCCTGAACTGATAGCTGCTTCAGAATTCAGAAAA
TTCAGAAGTTAACCACACGTGTAATCTAACNGCCGCATCCATTTCATTTTATTTTTACGTGATACGTGACTCTATTTTTA
CGATGAATAGTTGATGCCAACAATGCTGATTAATTAACCACATAGTAATACAAGTAAGCAACGCTTGAAATCAACAGGAC
ATAGCAAACCAATTCCATTCTTTTCTGATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33674.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis