Browse Element(s) Details


Os.10971.1.S1_at

Description gb:AK099507.1
DB_XREF= gi:32984716
TID=Os.10971.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10971 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-038-E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013029B17, full insert sequence.
FL= gb:AK104741.1 gb:AK099507.1 gb:AK060110.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5433011/11N-terminal acetyltransferase complex ARD1 subunit homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g54270NANA4+32095550..32098786transposon protein, putative, unclassified
LOC_Os04g54280Os.27639.1.S1_x_at8/114+32100580..32104684retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g54280Os.53731.1.S1_at3/114+32100580..32104684retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g54280Os.9913.1.S1_at2/114+32100580..32104684retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g54300Os.6764.2.S1_at10/114+32112432..32114924wound induced protein, putative, expressed
LOC_Os04g54300Os.7705.1.S1_at9/114+32112432..32114924wound induced protein, putative, expressed
LOC_Os04g54310OsAffx.14412.1.S1_at11/114+32117280..32118805hypothetical protein
LOC_Os04g54310Os.6764.1.S1_at9/114+32117280..32118805hypothetical protein
LOC_Os04g54310Os.39998.1.A1_x_at9/114+32117280..32118805hypothetical protein
LOC_Os04g54310Os.39998.1.A1_at8/114+32117280..32118805hypothetical protein
LOC_Os04g54320Os.7707.1.S1_at11/114+32119350..32120467expressed protein
LOC_Os04g54330Os.10971.1.S1_at11/114+32120595..32123359N-terminal acetyltransferase complex ARD1 subunit homolog, putative, expressed
LOC_Os04g54330Os.10971.1.S1_a_at11/114+32120595..32123359N-terminal acetyltransferase complex ARD1 subunit homolog, putative, expressed
LOC_Os04g54330Os.10971.2.S1_at11/114+32120595..32123359N-terminal acetyltransferase complex ARD1 subunit homolog, putative, expressed
LOC_Os04g54340Os.53037.1.S1_at11/114+32123528..32129355Double-strand break repair protein MRE11, putative, expressed
LOC_Os04g54350Os.4845.1.S1_at8/114+32129344..32132785SPRY domain containing protein, expressed
LOC_Os04g54360Os.5910.1.S1_at11/114+32134421..32136977Glycosyl transferase family 8 protein, expressed
LOC_Os04g54370Os.54152.1.S1_at7/114+32137092..32139691expressed protein
LOC_Os04g54380Os.57400.1.S1_at11/114+32140701..32143586aluminum resistance protein homolog, putative
LOC_Os04g54390Os.33674.1.S1_at11/114+32143944..32145970S1/P1 Nuclease family protein, expressed
LOC_Os04g54400Os.56266.1.S1_at11/114+32146617..32150894transposon protein, putative, Mutator sub-class, expressed
LOC_Os04g54400OsAffx.22607.1.S1_at1/114+32146617..32150894transposon protein, putative, Mutator sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0005737cellular_componentcytoplasm
GO:0008080molecular_functionN-acetyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10971.1.S1_at--37--8931Chr04:32120933..32120957 (25 bp)
TGAGCCCGTTGGACTTGCATCTGGT
LOC_Os04g54330
Os.10971.1.S1_at--929--8591Chr04:32120912..32120936 (25 bp)
TGGTGCACTCACTCTTTTGATAAGA
LOC_Os04g54330
Os.10971.1.S1_at--504--10231Chr04:32120819..32120843 (25 bp)
TTTGTTGGCCGATGATTCACCCATG
LOC_Os04g54330
Os.10971.1.S1_at--429--4411Chr04:32120793..32120817 (25 bp)
GCCAGGGTCCACTGTAATTCTGTTT
LOC_Os04g54330
Os.10971.1.S1_at--921--2251Chr04:32120757..32120781 (25 bp)
AAATACTTTTGTTAGCTACTTGGCA
LOC_Os04g54330
Os.10971.1.S1_at--434--211Chr04:32120733..32120757 (25 bp)
ATTTGCTGTCGTGCCTGTAATATCT
LOC_Os04g54330
Os.10971.1.S1_at--925--9731Chr04:32120716..32120740 (25 bp)
TAATATCTCCCCATACTTGCGGAAT
LOC_Os04g54330
Os.10971.1.S1_at--476--3551Chr04:32120680..32120704 (25 bp)
CATCTGGGCATATGTACTTGGCTAC
LOC_Os04g54330
Os.10971.1.S1_at--869--172Chr03:34790182..34790438 (25 bp)
ATTTTTGGTGTATCTCCTTGACTCA
NONE
Os.10971.1.S1_at--1055--4311Chr04:32120618..32120642 (25 bp)
CCTTGACTCAAAACACCTGCGTGAA
LOC_Os04g54330
Os.10971.1.S1_at--1046--3811Chr04:32120602..32120626 (25 bp)
CTGCGTGAAGTTATTGTTTGCCAAA
LOC_Os04g54330
Target Sequence 
TGAGCCCGTTGGACTTGCATCTGGTGCACTCACTCTTTTGATAAGAAGTCCAGCGAAATCATTTCCTAAGGAAACAAAAG
ATATGTACTGTGATTATGTGTGTTTGTAGGCATCTTTGTTGGCCGATGATTCACCCATGGGCCAGGGTCCACTGTAATTC
TGTTTGATGGACGTACAAATACTTTTGTTAGCTACTTGGCATTTGCTGTCGTGCCTGTAATATCTCCCCATACTTGCGGA
ATTTTTTTTGGCACATCTGGGCATATGTACTTGGCTACATTCTGTAGCACGCATAAAGTCATTTTTGGTGTATCTCCTTG
ACTCAAAACACCTGCGTGAAGTTATTGTTTGCCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10971.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis