Browse Element(s) Details

Os.6764.2.S1_at

Description

gb:AU094414
DB_XREF= gi:8857096
DB_XREF=AU094414
CLONE=E10548
TID=Os.6764.2
CNT=14
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.6764 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_192765.1 (A.thaliana) probable wound-induced protein (Arabidopsis thaliana)
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os04g54300	10/11	wound induced protein, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os04g54250	OsAffx.8980.1.S1_at	5/11	4	+	32085753..32087552	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g54260	NA	NA	4	+	32088752..32094910	transposon protein, putative, unclassified
LOC_Os04g54270	NA	NA	4	+	32095550..32098786	transposon protein, putative, unclassified
LOC_Os04g54280	Os.27639.1.S1_x_at	8/11	4	+	32100580..32104684	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g54280	Os.53731.1.S1_at	3/11	4	+	32100580..32104684	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g54280	Os.9913.1.S1_at	2/11	4	+	32100580..32104684	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g54300	Os.6764.2.S1_at	10/11	4	+	32112432..32114924	wound induced protein, putative, expressed
LOC_Os04g54300	Os.7705.1.S1_at	9/11	4	+	32112432..32114924	wound induced protein, putative, expressed
LOC_Os04g54310	OsAffx.14412.1.S1_at	11/11	4	+	32117280..32118805	hypothetical protein
LOC_Os04g54310	Os.6764.1.S1_at	9/11	4	+	32117280..32118805	hypothetical protein
LOC_Os04g54310	Os.39998.1.A1_x_at	9/11	4	+	32117280..32118805	hypothetical protein
LOC_Os04g54310	Os.39998.1.A1_at	8/11	4	+	32117280..32118805	hypothetical protein
LOC_Os04g54320	Os.7707.1.S1_at	11/11	4	+	32119350..32120467	expressed protein
LOC_Os04g54330	Os.10971.1.S1_at	11/11	4	+	32120595..32123359	N-terminal acetyltransferase complex ARD1 subunit homolog, putative, expressed
LOC_Os04g54330	Os.10971.1.S1_a_at	11/11	4	+	32120595..32123359	N-terminal acetyltransferase complex ARD1 subunit homolog, putative, expressed
LOC_Os04g54330	Os.10971.2.S1_at	11/11	4	+	32120595..32123359	N-terminal acetyltransferase complex ARD1 subunit homolog, putative, expressed
LOC_Os04g54340	Os.53037.1.S1_at	11/11	4	+	32123528..32129355	Double-strand break repair protein MRE11, putative, expressed
LOC_Os04g54350	Os.4845.1.S1_at	8/11	4	+	32129344..32132785	SPRY domain containing protein, expressed
LOC_Os04g54360	Os.5910.1.S1_at	11/11	4	+	32134421..32136977	Glycosyl transferase family 8 protein, expressed
LOC_Os04g54370	Os.54152.1.S1_at	7/11	4	+	32137092..32139691	expressed protein

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0009611	biological_process	response to wounding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.6764.2.S1_at--961--245	1	Chr04:32112856..32112880 (25 bp)	AACAATCCGGTCCAATTCTCAGCAA	LOC_Os04g54300
Os.6764.2.S1_at--632--145	1	Chr04:32112828..32112852 (25 bp)	AGAAGAGATCGATCCAATGGCGGGT	LOC_Os04g54300
Os.6764.2.S1_at--74--439	1	Chr04:32112567..32112591 (25 bp)	CCAATTAGTATAGCTCTGTCTACTA	LOC_Os04g54300
Os.6764.2.S1_at--682--481	1	Chr04:32112555..32112579 (25 bp)	GCTCTGTCTACTATAGCTAGCTAAT	LOC_Os04g54300
Os.6764.2.S1_at--187--21	1	NONE	ATAGTAGTAGGATAGAGTCGGGTTT	NONE
Os.6764.2.S1_at--597--449	1	Chr04:32112483..32112507 (25 bp)	GCCGGTTGCTTGTTGAATTCCTCCT	LOC_Os04g54300
Os.6764.2.S1_at--40--791	1	Chr04:32112480..32112504 (25 bp)	GGTTGCTTGTTGAATTCCTCCTGAT	LOC_Os04g54300
Os.6764.2.S1_at--488--493	1	Chr04:32112476..32112500 (25 bp)	GCTTGTTGAATTCCTCCTGATTGTA	LOC_Os04g54300
Os.6764.2.S1_at--269--667	1	Chr04:32112472..32112496 (25 bp)	GTTGAATTCCTCCTGATTGTATATA	LOC_Os04g54300
Os.6764.2.S1_at--153--927	1	Chr04:32112465..32112489 (25 bp)	TCCTCCTGATTGTATATACCACGAA	LOC_Os04g54300
Os.6764.2.S1_at--628--427	1	Chr04:32112461..32112485 (25 bp)	CCTGATTGTATATACCACGAAGATG	LOC_Os04g54300

Target Sequence

AACAATCCGGTCCAATTCTCAGCAAGAAAGAAGAGATCGATCCAATGGCGGGTGCAGCGAAGGCGTCTTGGATGGTGGCG
ATGAGCGTGGGCGCAGTGGAGGCGCTCAAGGACCAGGGCGGACTCTGCCGCTGGAACTACGCGCTGCGGTCCATCCACAA
GGCGGCCAAGGCCAACGCCGCCGGCGTCTCGCAGGGCAAGAAGCTGCCTGCCTCCGCGGCGGCGGTAGCGGAGAGGAGGA
GAGCGGAGAAGGCCGAGGAGGGGTTGAGGACGGTCATGTACATCAGCTGCTGGAGCACCAATTAGTATAGCTCTGTCTAC
TATAGCTAGCTAATAGTAGTAGGATAGAGTCGGGTTTGGAAGGGGCAAGCATGGCTGAGACTTGCCGGTTGCTTGTTGAA
TTCCTCCTGATTGTATATACCACGAAGATG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis