Browse Element(s) Details


Os.7705.1.S1_at

Description gb:AK069933.1
DB_XREF= gi:32979957
TID=Os.7705.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.7705 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023036C16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023036C16, full insert sequence.
FL= gb:AK069933.1 gb:AK119684.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g543009/11wound induced protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g54250OsAffx.8980.1.S1_at5/114+32085753..32087552retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g54260NANA4+32088752..32094910transposon protein, putative, unclassified
LOC_Os04g54270NANA4+32095550..32098786transposon protein, putative, unclassified
LOC_Os04g54280Os.27639.1.S1_x_at8/114+32100580..32104684retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g54280Os.53731.1.S1_at3/114+32100580..32104684retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g54280Os.9913.1.S1_at2/114+32100580..32104684retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g54300Os.6764.2.S1_at10/114+32112432..32114924wound induced protein, putative, expressed
LOC_Os04g54300Os.7705.1.S1_at9/114+32112432..32114924wound induced protein, putative, expressed
LOC_Os04g54310OsAffx.14412.1.S1_at11/114+32117280..32118805hypothetical protein
LOC_Os04g54310Os.6764.1.S1_at9/114+32117280..32118805hypothetical protein
LOC_Os04g54310Os.39998.1.A1_x_at9/114+32117280..32118805hypothetical protein
LOC_Os04g54310Os.39998.1.A1_at8/114+32117280..32118805hypothetical protein
LOC_Os04g54320Os.7707.1.S1_at11/114+32119350..32120467expressed protein
LOC_Os04g54330Os.10971.1.S1_at11/114+32120595..32123359N-terminal acetyltransferase complex ARD1 subunit homolog, putative, expressed
LOC_Os04g54330Os.10971.1.S1_a_at11/114+32120595..32123359N-terminal acetyltransferase complex ARD1 subunit homolog, putative, expressed
LOC_Os04g54330Os.10971.2.S1_at11/114+32120595..32123359N-terminal acetyltransferase complex ARD1 subunit homolog, putative, expressed
LOC_Os04g54340Os.53037.1.S1_at11/114+32123528..32129355Double-strand break repair protein MRE11, putative, expressed
LOC_Os04g54350Os.4845.1.S1_at8/114+32129344..32132785SPRY domain containing protein, expressed
LOC_Os04g54360Os.5910.1.S1_at11/114+32134421..32136977Glycosyl transferase family 8 protein, expressed
LOC_Os04g54370Os.54152.1.S1_at7/114+32137092..32139691expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7705.1.S1_at--352--411Chr04:32114870..32114894 (25 bp)
ATCAGTAGTACTTCACTGCTCGCTA
LOC_Os04g54300
Os.7705.1.S1_at--1010--1171Chr04:32114864..32114888 (25 bp)
AGTACTTCACTGCTCGCTACTAGTC
LOC_Os04g54300
Os.7705.1.S1_at--296--4851NONE
GCTACTAGTCCCCTGAATTCAGCGA
NONE
Os.7705.1.S1_at--804--7231NONE
GTCCCCTGAATTCAGCGATCAGTAT
NONE
Os.7705.1.S1_at--685--4631Chr04:32114828..32114852 (25 bp)
GCGATCAGTATAACAGCGGGAAGCT
LOC_Os04g54300
Os.7705.1.S1_at--482--10451Chr04:32114523..32114547 (25 bp)
TTAGTATAGCTGTGCCTTCTACTCT
LOC_Os04g54300
Os.7705.1.S1_at--757--3651Chr04:32114500..32114524 (25 bp)
CTTCTACTACTAGCTTTGCTATAGG
LOC_Os04g54300
Os.7705.1.S1_at--569--10251Chr04:32114486..32114510 (25 bp)
TTTGCTATAGGAGTCAGGTTGGAAC
LOC_Os04g54300
Os.7705.1.S1_at--592--2051Chr04:32114463..32114487 (25 bp)
ACTTGGAAGTGGCAACCATGGCTGA
LOC_Os04g54300
Os.7705.1.S1_at--598--4491Chr04:32114433..32114457 (25 bp)
GCCGGTTGCTTGTTAATTTCCTCCG
LOC_Os04g54300
Os.7705.1.S1_at--1002--8771Chr04:32114423..32114447 (25 bp)
TGTTAATTTCCTCCGGGTTGTATAT
LOC_Os04g54300
Target Sequence 
ATCAGTAGTACTTCACTGCTCGCTACTAGTCCCCTGAATTCAGCGATCAGTATAACAGCGGGAAGCTCAAGAAGAGATCG
TCGATCGATGGCGGGTGCAGCGAAGGCGTCGTGGATGGTGGCGATGAGCGTGGGCGCGGTGGAGGCGCTCAAGGACCAGG
CGGGGCTCTGCCGCTGGAACTACGCGCTGCGGTCCATCCACCGCGCCGCCAAGGCCAACGCGCGCGCCGGCGTCTCGCGG
GGCAAGAAGCTGCCTGCCTCCGCGGCGGCGGTGGCGGAGAGGAGGAGAGCGGAGAAGGCCGANGGAAGGGTTGAGGACGG
TCATGTACATCAGCTGCTGGAGTACCAATTAGTATAGCTGTGCCTTCTACTCTTCTACTACTAGCTTTGCTATAGGAGTC
AGGTTGGAACTTGGAAGTGGCAACCATGGCTGAGACTTGCCGGTTGCTTGTTAATTTCCTCCGGGTTGTATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7705.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis