Browse Element(s) Details


Os.54152.1.S1_at

Description gb:AK102214.1
DB_XREF= gi:32987423
TID=Os.54152.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54152 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033087K04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033087K04, full insert sequence.
FL= gb:AK102214.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g543707/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g54300Os.6764.2.S1_at10/114+32112432..32114924wound induced protein, putative, expressed
LOC_Os04g54300Os.7705.1.S1_at9/114+32112432..32114924wound induced protein, putative, expressed
LOC_Os04g54310OsAffx.14412.1.S1_at11/114+32117280..32118805hypothetical protein
LOC_Os04g54310Os.6764.1.S1_at9/114+32117280..32118805hypothetical protein
LOC_Os04g54310Os.39998.1.A1_x_at9/114+32117280..32118805hypothetical protein
LOC_Os04g54310Os.39998.1.A1_at8/114+32117280..32118805hypothetical protein
LOC_Os04g54320Os.7707.1.S1_at11/114+32119350..32120467expressed protein
LOC_Os04g54330Os.10971.1.S1_at11/114+32120595..32123359N-terminal acetyltransferase complex ARD1 subunit homolog, putative, expressed
LOC_Os04g54330Os.10971.1.S1_a_at11/114+32120595..32123359N-terminal acetyltransferase complex ARD1 subunit homolog, putative, expressed
LOC_Os04g54330Os.10971.2.S1_at11/114+32120595..32123359N-terminal acetyltransferase complex ARD1 subunit homolog, putative, expressed
LOC_Os04g54340Os.53037.1.S1_at11/114+32123528..32129355Double-strand break repair protein MRE11, putative, expressed
LOC_Os04g54350Os.4845.1.S1_at8/114+32129344..32132785SPRY domain containing protein, expressed
LOC_Os04g54360Os.5910.1.S1_at11/114+32134421..32136977Glycosyl transferase family 8 protein, expressed
LOC_Os04g54370Os.54152.1.S1_at7/114+32137092..32139691expressed protein
LOC_Os04g54380Os.57400.1.S1_at11/114+32140701..32143586aluminum resistance protein homolog, putative
LOC_Os04g54390Os.33674.1.S1_at11/114+32143944..32145970S1/P1 Nuclease family protein, expressed
LOC_Os04g54400Os.56266.1.S1_at11/114+32146617..32150894transposon protein, putative, Mutator sub-class, expressed
LOC_Os04g54400OsAffx.22607.1.S1_at1/114+32146617..32150894transposon protein, putative, Mutator sub-class, expressed
LOC_Os04g54410Os.10044.1.S2_at11/114+32151405..32159199expressed protein
LOC_Os04g54410Os.10044.1.S1_at11/114+32151405..32159199expressed protein
LOC_Os04g54420Os.11291.1.S1_at11/114+32159641..32162964expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54152.1.S1_at--76--4271Chr04:32137661..32137685 (25 bp)
CCTGAGACTGAGCTGGAGACTTCGA
LOC_Os04g54370
Os.54152.1.S1_at--385--6071Chr04:32137626..32137650 (25 bp)
GAGTGAAGCCAACCAAAACAGTACA
LOC_Os04g54370
Os.54152.1.S1_at--413--8991Chr04:32137567..32137591 (25 bp)
TGAAGCCCCGTATGCCCATATATAA
LOC_Os04g54370
Os.54152.1.S1_at--802--2331Chr04:32137482..32137506 (25 bp)
AAAGAGGACCAATGCTCCTTCTACC
LOC_Os04g54370
Os.54152.1.S1_at--88--3031Chr04:32137472..32137496 (25 bp)
AATGCTCCTTCTACCAATGTTGATG
LOC_Os04g54370
Os.54152.1.S1_at--686--6031NONE
GAGATGACCCAGATAGCTGCCATAT
NONE
Os.54152.1.S1_at--235--4791NONE
GCTGCCATATGCTAAATAGCCCTGA
NONE
Os.54152.1.S1_at--21--8931Chr04:32137242..32137266 (25 bp)
TGCAGTTACCAGTTTGTAGCCGATG
LOC_Os04g54370
Os.54152.1.S1_at--334--6972Chr07:14839229..14839472 (25 bp)
GTAGCCGATGGCAGCACAAATAATA
NONE
Os.54152.1.S1_at--996--7431NONE
GTGTAAACACTTTCTTGCACGACAA
NONE
Os.54152.1.S1_at--1157--7051NONE
GTAAGCACTAAATTTCTCTCTGAGG
NONE
Target Sequence 
CCTGAGACTGAGCTGGAGACTTCGAAGGATAGCTTGAGTGAAGCCAACCAAAACAGTACACAGGCTGTTGAACCTGTGGC
TGATCCTGCAGATGTGAAGCCCCGTATGCCCATATATAATGATGAAACAAAAGAGACAAGCAAGAGACGTAGGCGGAGAA
AGTTTAGATCCAGAAGGAAAAAGAGGACCAATGCTCCTTCTACCAATGTTGATGGAGAAGTCACCAAAGTAAGGTAGCCA
CAGCAAAACCAAAAAGATACTTGGATTTGGAAAATGACTGCAATGCAATGATGAATCATAAAAGGTATAGATAGGAAAAC
TGCAAAAACAATTCAAAAGAGATGACCCAGATAGCTGCCATATGCTAAATAGCCCTGAAGAGAAGGAAAGAAAATAATAG
CTAAGCAGCTGCAGTTACCAGTTTGTAGCCGATGGCAGCACAAATAATATTTCTGTTCTGAATATTACACTTTGTTTTGT
GTAAACACTTTCTTGCACGACAATTCATCAAAAGTTCTGTAAGCACTAAATTTCTCTCTGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54152.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis