Browse Element(s) Details


Os.49165.1.S1_at

Description gb:AK101408.1
DB_XREF= gi:32986617
TID=Os.49165.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.49165 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033037I12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033037I12, full insert sequence.
FL= gb:AK058405.1 gb:AK119286.1 gb:AK065789.1 gb:AK101408.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5444011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g54390Os.33674.1.S1_at11/114+32143944..32145970S1/P1 Nuclease family protein, expressed
LOC_Os04g54400Os.56266.1.S1_at11/114+32146617..32150894transposon protein, putative, Mutator sub-class, expressed
LOC_Os04g54400OsAffx.22607.1.S1_at1/114+32146617..32150894transposon protein, putative, Mutator sub-class, expressed
LOC_Os04g54410Os.10044.1.S2_at11/114+32151405..32159199expressed protein
LOC_Os04g54410Os.10044.1.S1_at11/114+32151405..32159199expressed protein
LOC_Os04g54420Os.11291.1.S1_at11/114+32159641..32162964expressed protein
LOC_Os04g54430Os.12125.1.S1_at11/114+32164845..32168038expressed protein
LOC_Os04g54440Os.49165.1.S1_at11/114+32169375..32173421RNA recognition motif family protein, expressed
LOC_Os04g54440Os.49165.1.S2_at10/114+32169375..32173421RNA recognition motif family protein, expressed
LOC_Os04g54450Os.53253.1.S1_at1/114+32175769..32180046retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g54450Os.26738.1.S1_at1/114+32175769..32180046retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g54460OsAffx.26599.1.S1_at11/114+32182419..32182725hypothetical protein
LOC_Os04g54474Os.27178.1.S1_s_at11/114+32184292..32192973Transcription factor TGA4, putative, expressed
LOC_Os04g54490OsAffx.14413.1.S1_at11/114+32195786..32196548hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009738biological_processabscisic acid mediated signaling
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49165.1.S1_at--866--2451Chr04:32171751..32171775 (25 bp)
AACAATTCACATCCTGCTTAATCGC
LOC_Os04g54440
Os.49165.1.S1_at--58--3671Chr04:32171727..32171751 (25 bp)
CTTCAAGTCCTCATTTACCACTAAT
LOC_Os04g54440
Os.49165.1.S1_at--154--6531Chr04:32171702..32171726 (25 bp)
GATTTGAGTTAGCTTATCCTCCAAA
LOC_Os04g54440
Os.49165.1.S1_at--1145--91Chr04:32171673..32171697 (25 bp)
ATTCGCAACTTGGTGATTTGGGCTA
LOC_Os04g54440
Os.49165.1.S1_at--941--10191Chr04:32171628..32171652 (25 bp)
TATATCTTAGTTTGGCATCTGCTGG
LOC_Os04g54440
Os.49165.1.S1_at--183--3551Chr04:32171613..32171637 (25 bp)
CATCTGCTGGTCGTGATTCGTTCGT
LOC_Os04g54440
Os.49165.1.S1_at--159--111Chr04:32171598..32171622 (25 bp)
ATTCGTTCGTGTGGTTTTGCATTCG
LOC_Os04g54440
Os.49165.1.S1_at--1015--6691Chr04:32171530..32171554 (25 bp)
GTTCCTGCTGTTGGCTTTTACAATC
LOC_Os04g54440
Os.49165.1.S1_at--876--9891Chr04:32171424..32171448 (25 bp)
TACTATGTAGCTTTGTCCTTGCAAC
LOC_Os04g54440
Os.49165.1.S1_at--353--7271Chr04:32171410..32171434 (25 bp)
GTCCTTGCAACTTCATCATGTACGT
LOC_Os04g54440
Os.49165.1.S1_at--168--7991Chr04:32171330..32171354 (25 bp)
GGATGTTATCCGGTCTTATTGATTA
LOC_Os04g54440
Target Sequence 
AACAATTCACATCCTGCTTAATCGCTTCAAGTCCTCATTTACCACTAATGATTTGAGTTAGCTTATCCTCCAAATATTAT
TCGCAACTTGGTGATTTGGGCTAAAAATTTCTGATTGTTTCTCTATATCTTAGTTTGGCATCTGCTGGTCGTGATTCGTT
CGTGTGGTTTTGCATTCGGATGGATTTTGAATCTATGTTGGTGCCAAAGTATTGCGAAAGGGTTCCTGCTGTTGGCTTTT
ACAATCAGATGGCTTTTGAATCAGGCANCTTTGTGGCAGTATTTACAGAAGGCGCTTTCTTGAAGAATTTATGTTGTTTT
TATTGCCTACTATGTAGCTTTGTCCTTGCAACTTCATCATGTACGTTATGGTTTCTGTAATGGGGTTTAATGTACTGAAA
TATCTGTATTTTGACTTGTTGGGATGTTATCCGGTCTTATTGATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49165.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis