Browse Element(s) Details

Os.26984.1.A1_at

Description

gb:CB631565
DB_XREF= gi:29626554
DB_XREF=OSIIEb09C19.r
CLONE=OSIIEb09C19
TID=Os.26984.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.26984 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g30200	1/11	transposon protein, putative, CACTA, En/Spm sub-class

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g30160	NA	NA	6	+	17409062..17409777	retrotransposon, putative, centromere-specific
LOC_Os06g30179	Os.26968.1.S1_at	9/11	6	+	17410748..17427541	Cytochrome P450 family protein, expressed
LOC_Os06g30179	Os.27691.1.S1_x_at	5/11	6	+	17410748..17427541	Cytochrome P450 family protein, expressed
LOC_Os06g30179	OsAffx.30013.5.S1_x_at	3/11	6	+	17410748..17427541	Cytochrome P450 family protein, expressed
LOC_Os06g30179	Os.27691.2.S1_x_at	2/11	6	+	17410748..17427541	Cytochrome P450 family protein, expressed
LOC_Os06g30179	Os.56292.1.S1_x_at	2/11	6	+	17410748..17427541	Cytochrome P450 family protein, expressed
LOC_Os06g30179	Os.44554.1.A1_at	1/11	6	+	17410748..17427541	Cytochrome P450 family protein, expressed
LOC_Os06g30179	Os.56292.1.S1_at	1/11	6	+	17410748..17427541	Cytochrome P450 family protein, expressed
LOC_Os06g30200	OsAffx.30217.1.S1_x_at	3/11	6	+	17428176..17429383	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g30200	Os.51185.2.S1_at	1/11	6	+	17428176..17429383	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g30200	Os.26984.1.A1_at	1/11	6	+	17428176..17429383	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g30210	OsAffx.27877.1.S1_at	10/11	6	+	17433122..17437215	expressed protein
LOC_Os06g30220	NA	NA	6	+	17441125..17442234	retrotransposon protein, putative, unclassified
LOC_Os06g30230	Os.15352.1.S1_at	11/11	6	+	17442893..17445408	expressed protein
LOC_Os06g30240	OsAffx.27878.1.S1_x_at	11/11	6	+	17451506..17451808	hypothetical protein
LOC_Os06g30240	OsAffx.27878.1.S1_at	11/11	6	+	17451506..17451808	hypothetical protein
LOC_Os06g30250	OsAffx.4970.1.S1_at	11/11	6	+	17453254..17454482	expressed protein

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.26984.1.A1_at--248--665	7	Chr12:18596219..18596242 (24 bp)	GTTGTTTTGTTGGATATCCGTGATA	NONE
Os.26984.1.A1_at--781--1031	1	Chr03:18512524..18512548 (25 bp)	TTTCTTTGTTTGGTTCATGTTTAGG	NONE
Os.26984.1.A1_at--691--351	1	Chr03:18512509..18512533 (25 bp)	CATGTTTAGGTGGAGAGTATTGCCG	NONE
Os.26984.1.A1_at--1072--111	1	Chr03:18512340..18512363 (24 bp)	AGTCGAATTTGCAAGGAGACCAAAA	NONE
Os.26984.1.A1_at--1000--877	1	Chr12:18599807..18599965 (25 bp)	TGTTTCTTGTATGGGATGGTTTCCT	NONE
Os.26984.1.A1_at--1109--79	2	Chr11:19402475..19402571 (25 bp)	ATGGGATGGTTTCCTAGATGGATTA	NONE
Os.26984.1.A1_at--567--567	3	Chr11:19402573..19402597 (25 bp)	GACTTCTTATGTGAGTTTGGTTCGT	NONE
Os.26984.1.A1_at--552--289	15	Chr12:9232458..9232480 (23 bp)	AAGGGTGTGGCCTCCCGGTATCGCA	NONE
Os.26984.1.A1_at--570--931	1	Chr03:18512180..18512204 (25 bp)	TCCCGGTATCGCATTAGAGAGCATT	NONE
Os.26984.1.A1_at--314--595	1	Chr03:18512148..18512172 (25 bp)	GAGAATAGTTAGTCGAAATTTTCGT	NONE
Os.26984.1.A1_at--451--1039	7	Chr09:5244010..5244030 (21 bp)	TTTTCGTGAGGAGTGCTATTGTTGC	NONE

Target Sequence

GTTGTTTTGTTGGATATCCGTGATAGTTTTATGTTTATGGCTTCTAGATAGATACTATACGTATGTAATACTGTTGTTTG
CTAACAATGAGTCAAGTTGGAGATAGCTTGTTCTCGGAATATGGTTTCTTTGTTTGGTTCATGTTTAGGTGGAGAGTATT
GCCGGTGATAGATCGGGAGTCGACTTGGAGATAAGGCGACGTCGGACGGTCAGATATCATGCGGGATACTTAGGCTAATG
TTCAATGCACGTGGTTGGTGAAGATTTCATATAGCATAAGATTTCATATTGTGTGCATATGGGATGCGGAGTCGAATTTG
CAAGGAGACCAAAATTTGGTACGATTGGAGTTTGTAAAGTTTGTTTCTTGTATGGGATGGTTTCCTAGATGGATTAGGAC
TTCTTATGTGAGTTTGGTTCGTGGCTTTAGGCTGCCTACCTCATGTATAAATAGAGGAAGGGTGTGGCCTCCCGGTATCG
CATTAGAGAGCATTGAGATGAGAGAATAGTTAGTCGAAATTTTCGTGAGGAGTGCTATTGTTGC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis