Browse Element(s) Details

Os.15352.1.S1_at

Description

gb:BM038055
DB_XREF= gi:16753676
DB_XREF=U002B10
CLONE=U002B10
TID=Os.15352.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.15352 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_173042.1 (A.thaliana) hypothetical protein (Arabidopsis thaliana)
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g30230	11/11	expressed protein
LOC_Os03g02070	1/11	heavy-metal-associated domain-containing protein, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g30179	Os.26968.1.S1_at	9/11	6	+	17410748..17427541	Cytochrome P450 family protein, expressed
LOC_Os06g30179	Os.27691.1.S1_x_at	5/11	6	+	17410748..17427541	Cytochrome P450 family protein, expressed
LOC_Os06g30179	OsAffx.30013.5.S1_x_at	3/11	6	+	17410748..17427541	Cytochrome P450 family protein, expressed
LOC_Os06g30179	Os.27691.2.S1_x_at	2/11	6	+	17410748..17427541	Cytochrome P450 family protein, expressed
LOC_Os06g30179	Os.56292.1.S1_x_at	2/11	6	+	17410748..17427541	Cytochrome P450 family protein, expressed
LOC_Os06g30179	Os.44554.1.A1_at	1/11	6	+	17410748..17427541	Cytochrome P450 family protein, expressed
LOC_Os06g30179	Os.56292.1.S1_at	1/11	6	+	17410748..17427541	Cytochrome P450 family protein, expressed
LOC_Os06g30200	OsAffx.30217.1.S1_x_at	3/11	6	+	17428176..17429383	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g30200	Os.51185.2.S1_at	1/11	6	+	17428176..17429383	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g30200	Os.26984.1.A1_at	1/11	6	+	17428176..17429383	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g30210	OsAffx.27877.1.S1_at	10/11	6	+	17433122..17437215	expressed protein
LOC_Os06g30220	NA	NA	6	+	17441125..17442234	retrotransposon protein, putative, unclassified
LOC_Os06g30230	Os.15352.1.S1_at	11/11	6	+	17442893..17445408	expressed protein
LOC_Os06g30240	OsAffx.27878.1.S1_x_at	11/11	6	+	17451506..17451808	hypothetical protein
LOC_Os06g30240	OsAffx.27878.1.S1_at	11/11	6	+	17451506..17451808	hypothetical protein
LOC_Os06g30250	OsAffx.4970.1.S1_at	11/11	6	+	17453254..17454482	expressed protein
LOC_Os06g30260	NA	NA	6	+	17458707..17462983	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g30270	NA	NA	6	+	17465821..17468563	hypothetical protein
LOC_Os06g30280	Os.16112.1.S1_s_at	11/11	6	+	17469749..17470494	expressed protein
LOC_Os06g30280	OsAffx.4971.1.S1_at	8/11	6	+	17469749..17470494	expressed protein

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Gene Ontology Classification

GO id	Type	Name
GO:0046872	molecular_function	metal ion binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.15352.1.S1_at--618--295	1	Chr06:17443929..17443953 (25 bp)	AATGGCAAAGTTGAGGCCTCCGCTT	LOC_Os06g30230
Os.15352.1.S1_at--179--447	1	Chr06:17443914..17443938 (25 bp)	GCCTCCGCTTGTGCCAAGCAATGAG	LOC_Os06g30230
Os.15352.1.S1_at--1155--219	1	Chr06:17443405..17443900 (25 bp)	AAATGACAGACCTGGGAACTAACCA	LOC_Os06g30230
Os.15352.1.S1_at--783--1077	1	Chr06:17443122..17443146 (25 bp)	TTGATGTGCTCTATGGACACACCCC	LOC_Os06g30230
Os.15352.1.S1_at--3--341	1	Chr06:17443093..17443117 (25 bp)	CAGCTAGGTATTGGTGTGGATTCTT	LOC_Os06g30230
Os.15352.1.S1_at--467--751	2	Chr06:17443078..17443102 (25 bp)	GTGGATTCTTGTGAGATACCTGATC	LOC_Os06g30230
Os.15352.1.S1_at--254--649	1	Chr06:17443063..17443088 (25 bp)	GATACCTGATCTTCACAGTGGTTTT	LOC_Os06g30230
Os.15352.1.S1_at--208--627	1	Chr06:17443029..17443054 (25 bp)	GATGTGCATAGAGCTCACAGCTGTT	LOC_Os06g30230
Os.15352.1.S1_at--244--591	1	Chr06:17443019..17443044 (25 bp)	GAGCTCACAGCTGTTACACTAACAT	LOC_Os06g30230
Os.15352.1.S1_at--815--373	1	Chr06:17443000..17443025 (25 bp)	CTAACATTTGCATAGAGCTCACAGT	LOC_Os06g30230
Os.15352.1.S1_at--763--483	1	Chr06:17442952..17442976 (25 bp)	GCTCAAATGTAGTTTAGTGCCCACC	LOC_Os06g30230

Target Sequence

AATGGCAAAGTTGAGGCCTCCGCTTGTGCCAAGCAATGAGAAAGTTGAGGCTGAAATGACAGACCTGGGAACTAACCAGA
GTATTAGAGAGCAACTGAAGATTGGACATAAGGCTNNNNNNANGTACACCCAGTCCCCAACTGCAAAAGCTCTGAANCTG
CATTTTTTTATCAGCCTGAACTAAATCAGATGGACAGACTGAGAGGGTAAATCAGTGTCTAGAAACTTATTTGTGTTGTT
TTACGCANTCTTGTCCATCCNAATGGGCCACNTAGGTTGTATTTGNCAGAATATNGGTACAANTACCGGTTATCATTCCA
CTTTGGNCAAAANTACTTTTGATGTGCTCTATGGACACACCCCCTACAGCTAGGTATTGGTGTGGATTCTTGTGAGATAC
CTGATCTTCACAGTGGTTTTCAAATGATGATGTGCATAGAGCTCACAGCTGTTACACTAACATTTGCATAGAGCTCACAG
TATATAAAGGGGGTGATAACTGTGCTCAAATGTAGTTTAGTGCCCACC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis