Browse Element(s) Details

OsAffx.27877.1.S1_at

Description

tigr:9634.m02904
TID=OsAffx.27877.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g30210	10/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g30160	NA	NA	6	+	17409062..17409777	retrotransposon, putative, centromere-specific
LOC_Os06g30179	Os.26968.1.S1_at	9/11	6	+	17410748..17427541	Cytochrome P450 family protein, expressed
LOC_Os06g30179	Os.27691.1.S1_x_at	5/11	6	+	17410748..17427541	Cytochrome P450 family protein, expressed
LOC_Os06g30179	OsAffx.30013.5.S1_x_at	3/11	6	+	17410748..17427541	Cytochrome P450 family protein, expressed
LOC_Os06g30179	Os.27691.2.S1_x_at	2/11	6	+	17410748..17427541	Cytochrome P450 family protein, expressed
LOC_Os06g30179	Os.56292.1.S1_x_at	2/11	6	+	17410748..17427541	Cytochrome P450 family protein, expressed
LOC_Os06g30179	Os.44554.1.A1_at	1/11	6	+	17410748..17427541	Cytochrome P450 family protein, expressed
LOC_Os06g30179	Os.56292.1.S1_at	1/11	6	+	17410748..17427541	Cytochrome P450 family protein, expressed
LOC_Os06g30200	OsAffx.30217.1.S1_x_at	3/11	6	+	17428176..17429383	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g30200	Os.51185.2.S1_at	1/11	6	+	17428176..17429383	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g30200	Os.26984.1.A1_at	1/11	6	+	17428176..17429383	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g30210	OsAffx.27877.1.S1_at	10/11	6	+	17433122..17437215	expressed protein
LOC_Os06g30220	NA	NA	6	+	17441125..17442234	retrotransposon protein, putative, unclassified
LOC_Os06g30230	Os.15352.1.S1_at	11/11	6	+	17442893..17445408	expressed protein
LOC_Os06g30240	OsAffx.27878.1.S1_x_at	11/11	6	+	17451506..17451808	hypothetical protein
LOC_Os06g30240	OsAffx.27878.1.S1_at	11/11	6	+	17451506..17451808	hypothetical protein
LOC_Os06g30250	OsAffx.4970.1.S1_at	11/11	6	+	17453254..17454482	expressed protein
LOC_Os06g30260	NA	NA	6	+	17458707..17462983	retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.27877.1.S1_at--650--713	1	Chr06:17436242..17436266 (25 bp)	GTCATACGACATGCGTCACATGAGG	LOC_Os06g30210
OsAffx.27877.1.S1_at--512--185	1	Chr06:17436247..17436271 (25 bp)	ACGACATGCGTCACATGAGGTTGGA	LOC_Os06g30210
OsAffx.27877.1.S1_at--875--709	1	Chr06:17436256..17436280 (25 bp)	GTCACATGAGGTTGGAGAGTTCCGA	LOC_Os06g30210
OsAffx.27877.1.S1_at--1023--601	1	Chr06:17436270..17436289 (20 bp)	GAGAGTTCCGAGAGATAGATCTCAA	LOC_Os06g30210
OsAffx.27877.1.S1_at--354--669	1	NONE	GTTCCGAGAGATAGATCTCAACGGA	NONE
OsAffx.27877.1.S1_at--129--369	1	Chr06:17436841..17436865 (25 bp)	CTCAACGGAGGGAACGCCACGAAAG	LOC_Os06g30210
OsAffx.27877.1.S1_at--732--759	1	Chr06:17436850..17436874 (25 bp)	GGGAACGCCACGAAAGCGGCCAACG	LOC_Os06g30210
OsAffx.27877.1.S1_at--763--409	1	Chr06:17436860..17436884 (25 bp)	CGAAAGCGGCCAACGCGAGCCACGG	LOC_Os06g30210
OsAffx.27877.1.S1_at--662--921	1	Chr06:17437111..17437135 (25 bp)	TCCAAGCTCGCTGGCGGTGGACTGA	LOC_Os06g30210
OsAffx.27877.1.S1_at--1104--479	1	Chr06:17437116..17437140 (25 bp)	GCTCGCTGGCGGTGGACTGAATATC	LOC_Os06g30210
OsAffx.27877.1.S1_at--285--773	1	Chr06:17437126..17437150 (25 bp)	GGTGGACTGAATATCGGCCGCCTCC	LOC_Os06g30210

Target Sequence

GTCATACGACATGCGTCACATGAGGTTGGAGAGTTCCGAGAGATAGATCTCAACGGAGGGAACGCCACGAAAGCGGCCAA
CGCGAGCCACGGCGGCGCGCAGGCGCAGCAGCAGCAGCAGCGCCAGCGCGACTGCCAGCTCATGGGGCTGACGTGGCTGC
TCCACCGGAACGCCACGCGGCACGGCGCCGCGGCCACGGCGGTGATCCAGGCGCTCATGGCCGCCGACGACGCCACCGGC
CGGCCCGCCCCTTGCTCGCTCCCCTCCGACGACCTGCCGGTCGCCGTCGCCTCGTCGGAGATCAACGGCGCCGCCGCCTC
CAAGCTCGCTGGCGGTGGACTGAATATCGGCCGCCTCC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis