Browse Element(s) Details

Os.26968.1.S1_at

Description

gb:CB630679
DB_XREF= gi:29625668
DB_XREF=OSIIEb07M01.r
CLONE=OSIIEb07M01
TID=Os.26968.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.26968 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_182079.1 (A.thaliana) putative cytochrome P450 (Arabidopsis thaliana)
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g30179	9/11	Cytochrome P450 family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g30140	NA	NA	6	+	17388412..17388862	transposon protein, putative, unclassified
LOC_Os06g30150	Os.46610.1.A1_x_at	2/11	6	+	17393901..17397615	transposon protein, putative, unclassified
LOC_Os06g30150	Os.2987.3.S1_x_at	2/11	6	+	17393901..17397615	transposon protein, putative, unclassified
LOC_Os06g30160	NA	NA	6	+	17409062..17409777	retrotransposon, putative, centromere-specific
LOC_Os06g30179	Os.26968.1.S1_at	9/11	6	+	17410748..17427541	Cytochrome P450 family protein, expressed
LOC_Os06g30179	Os.27691.1.S1_x_at	5/11	6	+	17410748..17427541	Cytochrome P450 family protein, expressed
LOC_Os06g30179	OsAffx.30013.5.S1_x_at	3/11	6	+	17410748..17427541	Cytochrome P450 family protein, expressed
LOC_Os06g30179	Os.27691.2.S1_x_at	2/11	6	+	17410748..17427541	Cytochrome P450 family protein, expressed
LOC_Os06g30179	Os.56292.1.S1_x_at	2/11	6	+	17410748..17427541	Cytochrome P450 family protein, expressed
LOC_Os06g30179	Os.44554.1.A1_at	1/11	6	+	17410748..17427541	Cytochrome P450 family protein, expressed
LOC_Os06g30179	Os.56292.1.S1_at	1/11	6	+	17410748..17427541	Cytochrome P450 family protein, expressed
LOC_Os06g30200	OsAffx.30217.1.S1_x_at	3/11	6	+	17428176..17429383	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g30200	Os.51185.2.S1_at	1/11	6	+	17428176..17429383	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g30200	Os.26984.1.A1_at	1/11	6	+	17428176..17429383	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g30210	OsAffx.27877.1.S1_at	10/11	6	+	17433122..17437215	expressed protein
LOC_Os06g30220	NA	NA	6	+	17441125..17442234	retrotransposon protein, putative, unclassified
LOC_Os06g30230	Os.15352.1.S1_at	11/11	6	+	17442893..17445408	expressed protein
LOC_Os06g30240	OsAffx.27878.1.S1_x_at	11/11	6	+	17451506..17451808	hypothetical protein
LOC_Os06g30240	OsAffx.27878.1.S1_at	11/11	6	+	17451506..17451808	hypothetical protein

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0019825	molecular_function	oxygen binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.26968.1.S1_at--861--29	1	NONE	ATACTCGGCTATGACGTACCCAAGA	NONE
Os.26968.1.S1_at--528--977	1	Chr06:17426990..17427014 (25 bp)	TACCCAAGAGAGCTACTGTAGTCGT	LOC_Os06g30179
Os.26968.1.S1_at--354--23	1	Chr06:17427017..17427041 (25 bp)	ATATATGGGCTATTTGCAGGGACGC	LOC_Os06g30179
Os.26968.1.S1_at--122--455	1	Chr06:17427155..17427179 (25 bp)	GCCCTGGAATGAATTTTGCACTTGC	LOC_Os06g30179
Os.26968.1.S1_at--998--83	1	Chr06:17427184..17427208 (25 bp)	ATGGAGCTTGCTCTCGCAAGTCTTC	LOC_Os06g30179
Os.26968.1.S1_at--1034--671	1	Chr06:17427241..17427265 (25 bp)	GTTCTCCCCGGCGATTTGGACATGA	LOC_Os06g30179
Os.26968.1.S1_at--709--239	1	Chr06:17427269..17427293 (25 bp)	AAACTATGGGCCTCACTGCTAGGAG	LOC_Os06g30179
Os.26968.1.S1_at--866--801	1	Chr06:17427297..17427321 (25 bp)	GGAGGACCTTTATGTGTGTGCTATT	LOC_Os06g30179
Os.26968.1.S1_at--399--747	1	Chr06:17427312..17427336 (25 bp)	GTGTGCTATTCCATTTGTGCAACTC	LOC_Os06g30179
Os.26968.1.S1_at--1010--153	1	NONE	AGCTTGATGGTTGTCCTGTCGAACT	NONE
Os.26968.1.S1_at--826--493	1	Chr06:17427431..17427455 (25 bp)	GCATTGTCTAGCCATGGATTGTTGT	LOC_Os06g30179

Target Sequence

ATACTCGGCTATGACGTACCCAAGAGAGCTACTGTAGTCGTGAATATATGGGCTATTTGCAGGGACGCTGAGATTTGGGA
TGAACCAGAGAAGTTCATGCCAGATAGGTTTGAGGGTAGTGCAATAGAACACAAAGGCAACCACTTCGAGTTCATACCGT
TTGGTGCTGGGCGAAGAATTTGCCCTGGAATGAATTTTGCACTTGCTAATATGGAGCTTGCTCTCGCAAGTCTTCTGTTT
TATTTTGACTGGAGTCTTCCGGAAGACGTTCTCCCCGGCGATTTGGACATGACGGAAACTATGGGCCTCACTGCTAGGAG
GAAGGAGGACCTTTATGTGTGTGCTATTCCATTTGTGCAACTCCCCTAATTTCCTTCGCCTCTTGTTCAGCTTGATGGTT
GTCCTGTCGAACTGACTNTACCACTNTACGTNTAGAGCAAGAATAAAATCCCNCATGGCATTGTCTAGCCATGGATTGTT
GT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis