Browse Element(s) Details

OsAffx.27878.1.S1_x_at

Description

tigr:9634.m02907
TID=OsAffx.27878.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g30240	11/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g30179	Os.26968.1.S1_at	9/11	6	+	17410748..17427541	Cytochrome P450 family protein, expressed
LOC_Os06g30179	Os.27691.1.S1_x_at	5/11	6	+	17410748..17427541	Cytochrome P450 family protein, expressed
LOC_Os06g30179	OsAffx.30013.5.S1_x_at	3/11	6	+	17410748..17427541	Cytochrome P450 family protein, expressed
LOC_Os06g30179	Os.27691.2.S1_x_at	2/11	6	+	17410748..17427541	Cytochrome P450 family protein, expressed
LOC_Os06g30179	Os.56292.1.S1_x_at	2/11	6	+	17410748..17427541	Cytochrome P450 family protein, expressed
LOC_Os06g30179	Os.44554.1.A1_at	1/11	6	+	17410748..17427541	Cytochrome P450 family protein, expressed
LOC_Os06g30179	Os.56292.1.S1_at	1/11	6	+	17410748..17427541	Cytochrome P450 family protein, expressed
LOC_Os06g30200	OsAffx.30217.1.S1_x_at	3/11	6	+	17428176..17429383	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g30200	Os.51185.2.S1_at	1/11	6	+	17428176..17429383	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g30200	Os.26984.1.A1_at	1/11	6	+	17428176..17429383	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g30210	OsAffx.27877.1.S1_at	10/11	6	+	17433122..17437215	expressed protein
LOC_Os06g30220	NA	NA	6	+	17441125..17442234	retrotransposon protein, putative, unclassified
LOC_Os06g30230	Os.15352.1.S1_at	11/11	6	+	17442893..17445408	expressed protein
LOC_Os06g30240	OsAffx.27878.1.S1_x_at	11/11	6	+	17451506..17451808	hypothetical protein
LOC_Os06g30240	OsAffx.27878.1.S1_at	11/11	6	+	17451506..17451808	hypothetical protein
LOC_Os06g30250	OsAffx.4970.1.S1_at	11/11	6	+	17453254..17454482	expressed protein
LOC_Os06g30260	NA	NA	6	+	17458707..17462983	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g30270	NA	NA	6	+	17465821..17468563	hypothetical protein
LOC_Os06g30280	Os.16112.1.S1_s_at	11/11	6	+	17469749..17470494	expressed protein
LOC_Os06g30280	OsAffx.4971.1.S1_at	8/11	6	+	17469749..17470494	expressed protein

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.27878.1.S1_x_at--1076--213	1	Chr06:17451751..17451775 (25 bp)	ACAGTTGATGTGATCGAGAGCGAGC	LOC_Os06g30240
OsAffx.27878.1.S1_x_at--240--79	1	Chr06:17451744..17451768 (25 bp)	ATGTGATCGAGAGCGAGCTCGATGC	LOC_Os06g30240
OsAffx.27878.1.S1_x_at--798--137	1	Chr06:17451666..17451690 (25 bp)	AGAGCGAGCTCGATTCCGCCGTGGC	LOC_Os06g30240
OsAffx.27878.1.S1_x_at--713--939	1	Chr06:17451657..17451681 (25 bp)	TCGATTCCGCCGTGGCTGCATGCGA	LOC_Os06g30240
OsAffx.27878.1.S1_x_at--416--425	1	Chr06:17451648..17451672 (25 bp)	CCGTGGCTGCATGCGAGGCGATTTT	LOC_Os06g30240
OsAffx.27878.1.S1_x_at--747--833	1	Chr06:17451644..17451668 (25 bp)	GGCTGCATGCGAGGCGATTTTCTAT	LOC_Os06g30240
OsAffx.27878.1.S1_x_at--30--463	1	Chr06:17451636..17451660 (25 bp)	GCGAGGCGATTTTCTATGATTCCGA	LOC_Os06g30240
OsAffx.27878.1.S1_x_at--67--91	1	Chr06:17451633..17451657 (25 bp)	AGGCGATTTTCTATGATTCCGATGA	LOC_Os06g30240
OsAffx.27878.1.S1_x_at--29--655	1	Chr06:17451629..17451653 (25 bp)	GATTTTCTATGATTCCGATGAGGTT	LOC_Os06g30240
OsAffx.27878.1.S1_x_at--1019--369	1	Chr06:17451623..17451647 (25 bp)	CTATGATTCCGATGAGGTTCATGTC	LOC_Os06g30240
OsAffx.27878.1.S1_x_at--143--417	1	Chr06:17451551..17451575 (25 bp)	CGCCGTGGACATCGTTGCTGTTGAT	LOC_Os06g30240

Target Sequence

ACAGTTGATGTGATCGAGAGCGAGCTCGATGCCGCCGTGGCTGTGGCCGAGATGGAGCTCGATGGTGCCGCAGTTACTGT
CCCCGAGAGCGAGCTCGATTCCGCCGTGGCTGCATGCGAGGCGATTTTCTATGATTCCGATGAGGTTCATGTCGTGGAGG
ACTCCTTTGCCGGCGACACGGAAGTTCCTGATACCCAAGTCGCCGTGGACATCGTTGCTGTTGAT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis