Browse Element(s) Details


OsAffx.4971.1.S1_at

Description tigr:9634.m02911
TID=OsAffx.4971.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g302808/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g30230Os.15352.1.S1_at11/116+17442893..17445408expressed protein
LOC_Os06g30240OsAffx.27878.1.S1_x_at11/116+17451506..17451808hypothetical protein
LOC_Os06g30240OsAffx.27878.1.S1_at11/116+17451506..17451808hypothetical protein
LOC_Os06g30250OsAffx.4970.1.S1_at11/116+17453254..17454482expressed protein
LOC_Os06g30260NANA6+17458707..17462983retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g30270NANA6+17465821..17468563hypothetical protein
LOC_Os06g30280Os.16112.1.S1_s_at11/116+17469749..17470494expressed protein
LOC_Os06g30280OsAffx.4971.1.S1_at8/116+17469749..17470494expressed protein
LOC_Os06g30290OsAffx.31780.2.S1_s_at6/116+17477779..17481218transposon protein, putative, unclassified
LOC_Os06g30290OsAffx.31780.2.S1_x_at2/116+17477779..17481218transposon protein, putative, unclassified
LOC_Os06g30290OsAffx.21663.1.S1_at1/116+17477779..17481218transposon protein, putative, unclassified
LOC_Os06g30290OsAffx.31780.1.S1_at1/116+17477779..17481218transposon protein, putative, unclassified
LOC_Os06g30300OsAffx.27879.1.S1_at10/116+17486640..17487153hypothetical protein
LOC_Os06g30310Os.18215.1.S1_at11/116+17487835..17500187Alpha-glucan water dikinase, chloroplast precursor, putative, expressed
LOC_Os06g30310OsAffx.10482.1.S1_x_at1/116+17487835..17500187Alpha-glucan water dikinase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4971.1.S1_at--416--10371Chr06:17469913..17469937 (25 bp)
TTTTATTAATACCTACTCCCTTCAT
LOC_Os06g30280
OsAffx.4971.1.S1_at--427--10352Chr08:22714280..22714393 (24 bp)
TTTATTAATACCTACTCCCTTCATT
NONE
OsAffx.4971.1.S1_at--1069--10351Chr06:17469911..17469935 (25 bp)
TTATTAATACCTACTCCCTTCATTC
LOC_Os06g30280
OsAffx.4971.1.S1_at--514--10211Chr06:17469910..17469934 (25 bp)
TATTAATACCTACTCCCTTCATTCC
LOC_Os06g30280
OsAffx.4971.1.S1_at--715--5231Chr06:17469818..17469842 (25 bp)
GAATACCAATCTTGCTATCTCGTCA
LOC_Os06g30280
OsAffx.4971.1.S1_at--1139--3091Chr06:17469817..17469841 (25 bp)
AATACCAATCTTGCTATCTCGTCAT
LOC_Os06g30280
OsAffx.4971.1.S1_at--428--311Chr06:17469816..17469840 (25 bp)
ATACCAATCTTGCTATCTCGTCATA
LOC_Os06g30280
OsAffx.4971.1.S1_at--376--9991Chr06:17469815..17469839 (25 bp)
TACCAATCTTGCTATCTCGTCATAT
LOC_Os06g30280
Target Sequence 
TTTTATTAATACCTACTCCCTTCATTCCAAAATAAACCAACCTACTAAGCATGTGACACATCCTAGTACCAGGTTGGTTT
ATTTTGGGACGGAGGGAATACCAATCTTGCTATCTCGTCATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4971.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis