Browse Element(s) Details


OsAffx.31780.2.S1_x_at

Description tigr:9640.m01716
TID=OsAffx.31780.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1752011/11hypothetical protein
LOC_Os08g251605/11transposon protein, putative, unclassified
LOC_Os01g592805/11transposon protein, putative, unclassified
LOC_Os06g302902/11transposon protein, putative, unclassified
LOC_Os01g347102/11transposon protein, putative, unclassified
LOC_Os11g301502/11transposon protein, putative, unclassified
LOC_Os07g181001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g17490Os.52152.1.S1_at5/1112+10014595..10018771NB-ARC domain containing protein
LOC_Os12g17500OsAffx.31779.1.S1_at11/1112+10019361..10020049hypothetical protein
LOC_Os12g17510OsAffx.22848.4.S1_at2/1112+10025144..10031102retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g17510OsAffx.22848.3.S1_x_at1/1112+10025144..10031102retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g17510OsAffx.22848.4.S1_x_at1/1112+10025144..10031102retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g17520OsAffx.31780.2.S1_at11/1112+10037579..10041323hypothetical protein
LOC_Os12g17520OsAffx.31780.2.S1_x_at11/1112+10037579..10041323hypothetical protein
LOC_Os12g17520OsAffx.31780.2.S1_s_at11/1112+10037579..10041323hypothetical protein
LOC_Os12g17520OsAffx.21663.1.S1_at3/1112+10037579..10041323hypothetical protein
LOC_Os12g17530Os.49192.1.S1_at11/1112+10046741..10050428expressed protein
LOC_Os12g17540OsAffx.19718.1.S1_at11/1112+10050822..10052611Vignain precursor, putative
LOC_Os12g17550OsAffx.7619.1.S1_at11/1112+10056128..10065032Leucine Rich Repeat family protein, expressed
LOC_Os12g17550OsAffx.28164.2.S1_at1/1112+10056128..10065032Leucine Rich Repeat family protein, expressed
LOC_Os12g17560NANA12+10066226..10066525hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31780.2.S1_x_at--451--6192Chr01:34598514..34598538 (25 bp)
GAGGAACCTCAACCAGCCGAAGAAC
LOC_Os01g59280
OsAffx.31780.2.S1_x_at--290--2914Chr06:17480765..17480784 (20 bp)
AAGGATGCCATCTCTCCAGAAGTTA
LOC_Os06g30290
OsAffx.31780.2.S1_x_at--197--6815Chr11:17027419..17027923 (25 bp)
GTTTTGAATTTGCACCTGAGGCTCA
NONE
OsAffx.31780.2.S1_x_at--621--3533Chr11:17027442..17027655 (25 bp)
CATGCCAATACGCTTAAAGAGGAGT
LOC_Os11g30150
OsAffx.31780.2.S1_x_at--1072--1474Chr11:17027666..17027690 (25 bp)
AGAATTGATCTTACACTCCGTGGAA
LOC_Os11g30150
OsAffx.31780.2.S1_x_at--117--8275Chr06:17481332..17481356 (25 bp)
GGCAGAGAAATTGCACACGCTTCAC
NONE
OsAffx.31780.2.S1_x_at--1098--5975Chr06:17481336..17481360 (25 bp)
GAGAAATTGCACACGCTTCACAGCG
NONE
OsAffx.31780.2.S1_x_at--372--3175Chr06:17481340..17481363 (24 bp)
AATTGCACACGCTTCACAGCGTGGA
NONE
OsAffx.31780.2.S1_x_at--690--10511Chr12:10037622..10037758 (25 bp)
TTCACAGCGTGGAAACTCGCACCAT
LOC_Os12g17520
OsAffx.31780.2.S1_x_at--290--3391Chr12:10037618..10037754 (25 bp)
CAGCGTGGAAACTCGCACCATCCAA
LOC_Os12g17520
OsAffx.31780.2.S1_x_at--1006--5531Chr12:10037611..10037635 (25 bp)
GAAACTCGCACCATCCAAACGGTAG
LOC_Os12g17520
Target Sequence 
GAGGAACCTCAACCAGCCGAAGAACTCAATATAATTGGGGAAGAATATGATAATCTCATGTGGGCCTACAATAAGAAGTT
AGCCAACTGGGAGAAGTCCAACAGAATGTGCTTAATTTATGTCAAGGATGCCATCTCTCCAGAAGTTATTGGAGGAATCA
TTGACTCTAATGACATTAAGACGTATCTGGCAAACATTGAAGAAAGTTTTGAATTTGCACCTGAGGCTCATGCCAATACG
CTTAAAGAGGAGTGGACCATACAAGAATTGATCTTACACTCCGTGGAAGAGGAAGAGCGCCAGAAAGCTGAAAAGCAGAA
GATTAAAGACCGGCTCAACCTCACTAATGCCTTTGATAAAGGCAAAAAGGTCTATCAAGGGGAATCCTCTAATAAGAATA
GCGAGCCAGAGGGTGAGCAGAATCAAGAAGGGATCAAGGCCTCCACTTCAGCTGTTCCTTTTAAGTACAAGTCCCTACTG
CCACTTCTGTGCGTCAGATGGACATTGGCAGAGAAATTGCACACGCTTCACAGCGTGGAAACTCGCACCATCCAAACGGT
AG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31780.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis