Browse Element(s) Details


OsAffx.19718.1.S1_at

Description tigr:9640.m01719
TID=OsAffx.19718.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Papain family cysteine protease, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1754011/11Vignain precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g17510OsAffx.22848.4.S1_at2/1112+10025144..10031102retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g17510OsAffx.22848.3.S1_x_at1/1112+10025144..10031102retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g17510OsAffx.22848.4.S1_x_at1/1112+10025144..10031102retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g17520OsAffx.31780.2.S1_at11/1112+10037579..10041323hypothetical protein
LOC_Os12g17520OsAffx.31780.2.S1_x_at11/1112+10037579..10041323hypothetical protein
LOC_Os12g17520OsAffx.31780.2.S1_s_at11/1112+10037579..10041323hypothetical protein
LOC_Os12g17520OsAffx.21663.1.S1_at3/1112+10037579..10041323hypothetical protein
LOC_Os12g17530Os.49192.1.S1_at11/1112+10046741..10050428expressed protein
LOC_Os12g17540OsAffx.19718.1.S1_at11/1112+10050822..10052611Vignain precursor, putative
LOC_Os12g17550OsAffx.7619.1.S1_at11/1112+10056128..10065032Leucine Rich Repeat family protein, expressed
LOC_Os12g17550OsAffx.28164.2.S1_at1/1112+10056128..10065032Leucine Rich Repeat family protein, expressed
LOC_Os12g17560NANA12+10066226..10066525hypothetical protein
LOC_Os12g17570OsAffx.31781.1.S1_x_at11/1112+10067571..10069441GDSL-motif lipase/hydrolase, putative
LOC_Os12g17570Os.51561.1.S1_x_at6/1112+10067571..10069441GDSL-motif lipase/hydrolase, putative
LOC_Os12g17570Os.28229.2.S1_x_at1/1112+10067571..10069441GDSL-motif lipase/hydrolase, putative
LOC_Os12g17580OsAffx.17234.1.S1_at1/1112+10072714..10073298transposon protein, putative, unclassified
LOC_Os12g17590OsAffx.31782.1.S1_at10/1112+10075714..10077504expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0007568biological_processaging
GO:0009723biological_processresponse to ethylene stimulus
GO:0010150biological_processleaf senescence
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19718.1.S1_at--486--5171Chr12:10052085..10052109 (25 bp)
GCAAGCTCATCTCGCTGTCGGAGCA
LOC_Os12g17540
OsAffx.19718.1.S1_at--452--9371Chr12:10052130..10052154 (25 bp)
TCGACGGCAACGACCAGGGCTGCGA
LOC_Os12g17540
OsAffx.19718.1.S1_at--831--2551Chr12:10052195..10052219 (25 bp)
AACGGCGGCCTCACAGCCGAGGCAA
LOC_Os12g17540
OsAffx.19718.1.S1_at--826--1671Chr12:10052209..10052233 (25 bp)
AGCCGAGGCAAACTACCCGTACACG
LOC_Os12g17540
OsAffx.19718.1.S1_at--848--2591Chr12:10052312..10052336 (25 bp)
AACGACGAGCCCAGCCTCATGAAGG
LOC_Os12g17540
OsAffx.19718.1.S1_at--676--5871Chr12:10052318..10052342 (25 bp)
GAGCCCAGCCTCATGAAGGCCGTCG
LOC_Os12g17540
OsAffx.19718.1.S1_at--400--9371Chr12:10052367..10052391 (25 bp)
TCGACGCGTCCAAGTTCCAGTTCTA
LOC_Os12g17540
OsAffx.19718.1.S1_at--498--3991Chr12:10052373..10052397 (25 bp)
CGTCCAAGTTCCAGTTCTACGGCGG
LOC_Os12g17540
OsAffx.19718.1.S1_at--24--5271Chr12:10052414..10052438 (25 bp)
GAATGCGGCACCAGCCTAGACCACG
LOC_Os12g17540
OsAffx.19718.1.S1_at--303--1931Chr12:10052436..10052460 (25 bp)
ACGGCGTCACCGTGATCGGCTATGG
LOC_Os12g17540
OsAffx.19718.1.S1_at--1141--4071Chr12:10052466..10052490 (25 bp)
CGAGCGATGGCACCAAGTATTGGCT
LOC_Os12g17540
Target Sequence 
GCAAGCTCATCTCGCTGTCGGAGCAGGAGCTGGTCGACTGCGACGTCGACGGCAACGACCAGGGCTGCGAGGGCGGCGAG
ATTGACGGCGCGTTCCAGTTCATCCTCAGCAACGGCGGCCTCACAGCCGAGGCAAACTACCCGTACACGGCGGAGGACGG
CCGGTGCAAGACCACGGCGGCGGCGGACGTCGCCGCGTCCATCAGGGGCTACGAGGACGTGCCGGCCAACGACGAGCCCA
GCCTCATGAAGGCCGTCGCCGGCCAGCCGGTGTCGGTGGCCGTCGACGCGTCCAAGTTCCAGTTCTACGGCGGCGGCGTG
ATGGCCGGCGAATGCGGCACCAGCCTAGACCACGGCGTCACCGTGATCGGCTATGGCGCGGCGAGCGATGGCACCAAGTA
TTGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19718.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis