Browse Element(s) Details


OsAffx.7619.1.S1_at

Description tigr:9640.m01720
TID=OsAffx.7619.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1755011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g17520OsAffx.31780.2.S1_at11/1112+10037579..10041323hypothetical protein
LOC_Os12g17520OsAffx.31780.2.S1_x_at11/1112+10037579..10041323hypothetical protein
LOC_Os12g17520OsAffx.31780.2.S1_s_at11/1112+10037579..10041323hypothetical protein
LOC_Os12g17520OsAffx.21663.1.S1_at3/1112+10037579..10041323hypothetical protein
LOC_Os12g17530Os.49192.1.S1_at11/1112+10046741..10050428expressed protein
LOC_Os12g17540OsAffx.19718.1.S1_at11/1112+10050822..10052611Vignain precursor, putative
LOC_Os12g17550OsAffx.7619.1.S1_at11/1112+10056128..10065032Leucine Rich Repeat family protein, expressed
LOC_Os12g17550OsAffx.28164.2.S1_at1/1112+10056128..10065032Leucine Rich Repeat family protein, expressed
LOC_Os12g17560NANA12+10066226..10066525hypothetical protein
LOC_Os12g17570OsAffx.31781.1.S1_x_at11/1112+10067571..10069441GDSL-motif lipase/hydrolase, putative
LOC_Os12g17570Os.51561.1.S1_x_at6/1112+10067571..10069441GDSL-motif lipase/hydrolase, putative
LOC_Os12g17570Os.28229.2.S1_x_at1/1112+10067571..10069441GDSL-motif lipase/hydrolase, putative
LOC_Os12g17580OsAffx.17234.1.S1_at1/1112+10072714..10073298transposon protein, putative, unclassified
LOC_Os12g17590OsAffx.31782.1.S1_at10/1112+10075714..10077504expressed protein
LOC_Os12g17600Os.12594.1.S1_x_at9/1112+10077831..10079028Ribulose bisphosphate carboxylase small chain C, chloroplast precursor, putative, expressed
LOC_Os12g17600Os.39363.1.A1_x_at2/1112+10077831..10079028Ribulose bisphosphate carboxylase small chain C, chloroplast precursor, putative, expressed
LOC_Os12g17600Os.28218.1.S1_x_at1/1112+10077831..10079028Ribulose bisphosphate carboxylase small chain C, chloroplast precursor, putative, expressed
LOC_Os12g17610OsAffx.7621.1.S1_at11/1112+10082760..10083598hypothetical protein
LOC_Os12g17620Os.53142.1.S1_at3/1112+10085505..10090947retrotransposon protein, putative, unclassified
LOC_Os12g17620Os.23706.1.A1_x_at1/1112+10085505..10090947retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006952biological_processdefense response
GO:0007165biological_processsignal transduction
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009598biological_processdetection of pathogenic bacteria
GO:0050832biological_processdefense response to fungi
GO:0016020cellular_componentmembrane
GO:0003723molecular_functionRNA binding
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7619.1.S1_at--54--2971Chr12:10056845..10056869 (25 bp)
AATGGCTCGCACATCTGGATACAGT
LOC_Os12g17550
OsAffx.7619.1.S1_at--839--5331Chr12:10056808..10056832 (25 bp)
GAAGTCATCGCAACTGGTCAAGGTG
LOC_Os12g17550
OsAffx.7619.1.S1_at--1017--2251Chr12:10056585..10056609 (25 bp)
AAATCCCGGAGACTATTGGTCAGCT
LOC_Os12g17550
OsAffx.7619.1.S1_at--575--5251Chr12:10056550..10056574 (25 bp)
GAATCTCTTGACCTATCTCACAATG
LOC_Os12g17550
OsAffx.7619.1.S1_at--14--3051Chr12:10056512..10056536 (25 bp)
AATCCCTTCGAGCATGCAGGATCTT
LOC_Os12g17550
OsAffx.7619.1.S1_at--705--831Chr12:10056495..10056519 (25 bp)
AGGATCTTAACGCTTTGGGCACCAT
LOC_Os12g17550
OsAffx.7619.1.S1_at--294--271Chr12:10056413..10056437 (25 bp)
ATATGACGCGTCTTCCTACATTGGA
LOC_Os12g17550
OsAffx.7619.1.S1_at--666--10091Chr12:10056378..10056402 (25 bp)
TATGTGGTCCTCCTTTAACTAGAAA
LOC_Os12g17550
OsAffx.7619.1.S1_at--238--10191Chr12:10056296..10056320 (25 bp)
TATATCCCTTTATCTTGGCATGGCT
LOC_Os12g17550
OsAffx.7619.1.S1_at--985--10231Chr12:10056272..10056296 (25 bp)
TATTGGATTTGTCCTCAGCCTCTGG
LOC_Os12g17550
OsAffx.7619.1.S1_at--1039--3751Chr12:10056253..10056277 (25 bp)
CTCTGGGTGGTTCTTTGTTTGCTGC
LOC_Os12g17550
Target Sequence 
AATGGCTCGCACATCTGGATACAGTGTTCTTCTAGATGAAGTCATCGCAACTGGTCAAGGTGCAATTTTGAACTTTTCTT
GGAACCTCATAAATGGGGAAATCCCGGAGACTATTGGTCAGCTCAAACAACTGGAATCTCTTGACCTATCTCACAATGAG
CTTTCTGGTGAAATCCCTTCGAGCATGCAGGATCTTAACGCTTTGGGCACCATGAACCTCTCATACAACAATCTATCTGG
AAGAATTCCAAGAGGAAACACTATGGGATCATATGACGCGTCTTCCTACATTGGAAACATTGGTCTATGTGGTCCTCCTT
TAACTAGAAACTGTTCTGGAAATGCGACAAGCAAAGACTTACCTAGAAATCATGTTGATTTGGAACATATATCCCTTTAT
CTTGGCATGGCTATTGGATTTGTCCTCAGCCTCTGGGTGGTTCTTTGTTTGCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7619.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis