Browse Element(s) Details

Os.39363.1.A1_x_at

Description

gb:CF299255
DB_XREF= gi:33671016
DB_XREF=7LEAF--03-D08.b1
CLONE=7LEAF--03-D08
TID=Os.39363.1
CNT=6
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.39363 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein pir:RKMUB2 (A.thaliana) RKMUB2 ribulose-bisphosphate carboxylase
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os12g17600	2/11	Ribulose bisphosphate carboxylase small chain C, chloroplast precursor, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os12g17550	OsAffx.7619.1.S1_at	11/11	12	+	10056128..10065032	Leucine Rich Repeat family protein, expressed
LOC_Os12g17550	OsAffx.28164.2.S1_at	1/11	12	+	10056128..10065032	Leucine Rich Repeat family protein, expressed
LOC_Os12g17560	NA	NA	12	+	10066226..10066525	hypothetical protein
LOC_Os12g17570	OsAffx.31781.1.S1_x_at	11/11	12	+	10067571..10069441	GDSL-motif lipase/hydrolase, putative
LOC_Os12g17570	Os.51561.1.S1_x_at	6/11	12	+	10067571..10069441	GDSL-motif lipase/hydrolase, putative
LOC_Os12g17570	Os.28229.2.S1_x_at	1/11	12	+	10067571..10069441	GDSL-motif lipase/hydrolase, putative
LOC_Os12g17580	OsAffx.17234.1.S1_at	1/11	12	+	10072714..10073298	transposon protein, putative, unclassified
LOC_Os12g17590	OsAffx.31782.1.S1_at	10/11	12	+	10075714..10077504	expressed protein
LOC_Os12g17600	Os.12594.1.S1_x_at	9/11	12	+	10077831..10079028	Ribulose bisphosphate carboxylase small chain C, chloroplast precursor, putative, expressed
LOC_Os12g17600	Os.39363.1.A1_x_at	2/11	12	+	10077831..10079028	Ribulose bisphosphate carboxylase small chain C, chloroplast precursor, putative, expressed
LOC_Os12g17600	Os.28218.1.S1_x_at	1/11	12	+	10077831..10079028	Ribulose bisphosphate carboxylase small chain C, chloroplast precursor, putative, expressed
LOC_Os12g17610	OsAffx.7621.1.S1_at	11/11	12	+	10082760..10083598	hypothetical protein
LOC_Os12g17620	Os.53142.1.S1_at	3/11	12	+	10085505..10090947	retrotransposon protein, putative, unclassified
LOC_Os12g17620	Os.23706.1.A1_x_at	1/11	12	+	10085505..10090947	retrotransposon protein, putative, unclassified
LOC_Os12g17630	Os.24831.3.S1_x_at	7/11	12	+	10095667..10098355	retrotransposon protein, putative, unclassified
LOC_Os12g17630	Os.24831.1.S1_x_at	6/11	12	+	10095667..10098355	retrotransposon protein, putative, unclassified
LOC_Os12g17630	Os.53142.1.S1_at	3/11	12	+	10095667..10098355	retrotransposon protein, putative, unclassified
LOC_Os12g17630	Os.24831.4.S1_x_at	2/11	12	+	10095667..10098355	retrotransposon protein, putative, unclassified
LOC_Os12g17630	Os.24831.3.S1_s_at	1/11	12	+	10095667..10098355	retrotransposon protein, putative, unclassified
LOC_Os12g17630	Os.23706.1.A1_x_at	1/11	12	+	10095667..10098355	retrotransposon protein, putative, unclassified
LOC_Os12g17640	NA	NA	12	+	10100797..10103007	retrotransposon protein, putative, unclassified

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Gene Ontology Classification

GO id	Type	Name
GO:0015977	biological_process	carbon utilization by fixation of carbon dioxide
GO:0009573	cellular_component	ribulose bisphosphate carboxylase complex (sensu Magnoliophyta)
GO:0016984	molecular_function	ribulose-bisphosphate carboxylase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.39363.1.A1_x_at--287--403	1	NONE	CGTATCATCGGGTTTGACAACGTCA	NONE
Os.39363.1.A1_x_at--301--689	1	NONE	GTATCATCGGGTTTGACAACGTCAG	NONE
Os.39363.1.A1_x_at--1026--1015	1	NONE	TATCATCGGGTTTGACAACGTCAGG	NONE
Os.39363.1.A1_x_at--837--345	1	NONE	CATCGGGTTTGACAACGTCAGGCAG	NONE
Os.39363.1.A1_x_at--618--605	1	NONE	GAGTTTGGTGGCAAATAAACCGTCA	NONE
Os.39363.1.A1_x_at--332--753	1	NONE	GTGGCAAATAAACCGTCATCGTCAA	NONE
Os.39363.1.A1_x_at--208--851	1	NONE	TGGCAAATAAACCGTCATCGTCAAA	NONE
Os.39363.1.A1_x_at--806--823	1	NONE	GGCAAATAAACCGTCATCGTCAAAA	NONE
Os.39363.1.A1_x_at--123--513	1	NONE	GCAAATAAACCGTCATCGTCAAAAA	NONE
Os.39363.1.A1_x_at--145--1079	1	Chr12:10078054..10078078 (25 bp)	TTGTTCATCGTCTTTTGATTTTACC	LOC_Os12g17600
Os.39363.1.A1_x_at--735--877	1	Chr12:10078053..10078077 (25 bp)	TGTTCATCGTCTTTTGATTTTACCG	LOC_Os12g17600

Target Sequence

CGTATCATCGGGTTTGACAACGTCAGGCAGGGGCAGNTNATCAGTTTTTTTGCCTACAAGCCCCCGGGTTNGNAGGAGTT
TGGTGGCAAATAAACCGTCATCGTCAAAAAAANCCCTGTTTAATTGTTCATNTTTGATTCGAANATGTTTCCCCCCCTGT
TTTGGGGGTTCCCNGNTTGTTCATCGTCTTTTGATTTTACCG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis