Browse Element(s) Details


Os.28218.1.S1_x_at

Description gb:CB682251
DB_XREF= gi:29685976
DB_XREF=OSJNEf09F17.r
CLONE=OSJNEf09F17
TID=Os.28218.1
CNT=550
FEA=FLmRNA
TIER=Stack
STK=42
UG=Os.28218 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013036G21, full insert sequence
FL= gb:AK099574.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1939411/11Ribulose bisphosphate carboxylase small chain A, chloroplast precursor, putative, expressed
LOC_Os12g176001/11Ribulose bisphosphate carboxylase small chain C, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g19370OsAffx.31810.1.S1_at11/1112+11239907..11257732DNA polymerase I family protein, expressed
LOC_Os12g19394Os.28218.1.S1_x_at11/1112+11259915..11275651Ribulose bisphosphate carboxylase small chain A, chloroplast precursor, putative, expressed
LOC_Os12g19394Os.28218.1.S1_at11/1112+11259915..11275651Ribulose bisphosphate carboxylase small chain A, chloroplast precursor, putative, expressed
LOC_Os12g19394Os.28133.1.S1_s_at10/1112+11259915..11275651Ribulose bisphosphate carboxylase small chain A, chloroplast precursor, putative, expressed
LOC_Os12g19394Os.28133.1.S1_x_at7/1112+11259915..11275651Ribulose bisphosphate carboxylase small chain A, chloroplast precursor, putative, expressed
LOC_Os12g19394Os.36903.1.S1_at1/1112+11259915..11275651Ribulose bisphosphate carboxylase small chain A, chloroplast precursor, putative, expressed
LOC_Os12g19420OsAffx.26050.13.S1_x_at5/1112+11283045..11283470NAD, putative
LOC_Os12g19430OsAffx.30475.9.S1_s_at8/1112+11285878..11286291ATP synthase epsilon chain, putative
LOC_Os12g19440OsAffx.7641.1.S1_at11/1112+11293171..11293621hypothetical protein
LOC_Os12g19450OsAffx.12179.1.S1_at1/1112+11296872..11299519hypothetical protein
LOC_Os12g19450Os.34295.1.S1_at1/1112+11296872..11299519hypothetical protein
LOC_Os12g19450OsAffx.12179.1.S1_x_at1/1112+11296872..11299519hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0015977biological_processcarbon utilization by fixation of carbon dioxide
GO:0009573cellular_componentribulose bisphosphate carboxylase complex (sensu Magnoliophyta)
GO:0016984molecular_functionribulose-bisphosphate carboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28218.1.S1_x_at--1059--4291Chr12:11275021..11275045 (25 bp)
GCCTTGCCTCGAGTTTAGTAAGGTC
LOC_Os12g19394
Os.28218.1.S1_x_at--335--6713Chr12:11275048..11275072 (25 bp)
GTTCGTCTACCGTGAGAACCACAGG
LOC_Os12g19394
Os.28218.1.S1_x_at--416--5431Chr12:11275063..11275087 (25 bp)
GAACCACAGGTCTCCTGGGTACTAT
LOC_Os12g19394
Os.28218.1.S1_x_at--36--4272Chr12:11275076..11275100 (25 bp)
CCTGGGTACTATGATGGCAGGTACT
LOC_Os12g19394
Os.28218.1.S1_x_at--42--4791Chr12:11275114..11275138 (25 bp)
GCTGCCTATGTTCGGATGCACTGAT
LOC_Os12g19394
Os.28218.1.S1_x_at--158--10131Chr12:11275120..11275144 (25 bp)
TATGTTCGGATGCACTGATGCCACC
LOC_Os12g19394
Os.28218.1.S1_x_at--421--8451Chr12:11275168..11275192 (25 bp)
GGCCAAGAAGGCATATCCAGATGCA
LOC_Os12g19394
Os.28218.1.S1_x_at--391--6331Chr12:11275187..11275211 (25 bp)
GATGCATTTGTTCGCATCATCGGCT
LOC_Os12g19394
Os.28218.1.S1_x_at--739--211Chr12:11275192..11275216 (25 bp)
ATTTGTTCGCATCATCGGCTTCGAC
LOC_Os12g19394
Os.28218.1.S1_x_at--1035--3731Chr12:11275313..11275337 (25 bp)
CTCACTCGTGAGCTCTATACAGAGG
LOC_Os12g19394
Os.28218.1.S1_x_at--853--3991Chr12:11275319..11275343 (25 bp)
CGTGAGCTCTATACAGAGGAGACTC
LOC_Os12g19394
Target Sequence 
GCCTTGCCTCGAGTTTAGTAAGGTCGGGTTCGTCTACCGTGAGAACCACAGGTCTCCTGGGTACTATGATGGCAGGTACT
GGACCATGTGGAAGCTGCCTATGTTCGGATGCACTGATGCCACCCAGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCA
TATCCAGATGCATTTGTTCGCATCATCGGCTTCGACAACGTCAGGCAGGTGCAGTTGATTAGCTTCATCGCCTACAAGCC
CCCGGGTTGCGAGGAGTCCGGCGGAAACTAAGCTAGTTGGCAAGCCAGCAAGCTCACTCGTGAGCTCTATACAGAGGAGA
CTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28218.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis