Browse Element(s) Details


OsAffx.31810.1.S1_at

Description tigr:9640.m01914
TID=OsAffx.31810.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1937011/11DNA polymerase I family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g19350OsAffx.31809.1.S1_at11/1112+11215979..11230320expressed protein
LOC_Os12g19350Os.13552.1.S1_at11/1112+11215979..11230320expressed protein
LOC_Os12g19350Os.51380.1.S1_at11/1112+11215979..11230320expressed protein
LOC_Os12g19350Os.53379.1.S1_at1/1112+11215979..11230320expressed protein
LOC_Os12g19370OsAffx.31810.1.S1_at11/1112+11239907..11257732DNA polymerase I family protein, expressed
LOC_Os12g19394Os.28218.1.S1_x_at11/1112+11259915..11275651Ribulose bisphosphate carboxylase small chain A, chloroplast precursor, putative, expressed
LOC_Os12g19394Os.28218.1.S1_at11/1112+11259915..11275651Ribulose bisphosphate carboxylase small chain A, chloroplast precursor, putative, expressed
LOC_Os12g19394Os.28133.1.S1_s_at10/1112+11259915..11275651Ribulose bisphosphate carboxylase small chain A, chloroplast precursor, putative, expressed
LOC_Os12g19394Os.28133.1.S1_x_at7/1112+11259915..11275651Ribulose bisphosphate carboxylase small chain A, chloroplast precursor, putative, expressed
LOC_Os12g19394Os.36903.1.S1_at1/1112+11259915..11275651Ribulose bisphosphate carboxylase small chain A, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006260biological_processDNA replication
GO:0003677molecular_functionDNA binding
GO:0003887molecular_functionDNA-directed DNA polymerase activity
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31810.1.S1_at--1159--9671Chr12:11253715..11253739 (25 bp)
TCACGGGCTCAGTTGTGCAGCAAAT
LOC_Os12g19370
OsAffx.31810.1.S1_at--273--8131Chr12:11253760..11253784 (25 bp)
GGAAATTGGCTCCAGACATCAACTG
LOC_Os12g19370
OsAffx.31810.1.S1_at--152--9211Chr12:11253783..11253807 (25 bp)
TGCCACTGGCCGTCTATCAATGGAA
LOC_Os12g19370
OsAffx.31810.1.S1_at--1096--6551Chr12:11254158..11254182 (25 bp)
GATTACTCACAGATCGAGCTGCGTT
LOC_Os12g19370
OsAffx.31810.1.S1_at--831--1591Chr12:11254174..11254198 (25 bp)
AGCTGCGTTTAATGGCTCATTTTTC
LOC_Os12g19370
OsAffx.31810.1.S1_at--1090--2351Chr12:11254278..11254302 (25 bp)
AAAGCGGAGTCCTTGATCTGTTCAA
LOC_Os12g19370
OsAffx.31810.1.S1_at--204--4991Chr12:11254336..11254360 (25 bp)
GCATCCTCTATGGAATGGGTGCCAA
LOC_Os12g19370
OsAffx.31810.1.S1_at--348--7711Chr12:11254352..11254376 (25 bp)
GGGTGCCAACTCTCTAGCAGAACAA
LOC_Os12g19370
OsAffx.31810.1.S1_at--347--1431Chr12:11254370..11254394 (25 bp)
AGAACAACTTGAATGCAGCCCAGAA
LOC_Os12g19370
OsAffx.31810.1.S1_at--960--8611Chr12:11254436..11254460 (25 bp)
TGGTGTCTCTTCATGGCTACACGAA
LOC_Os12g19370
OsAffx.31810.1.S1_at--578--5411Chr12:11254458..11254482 (25 bp)
GAAGCTGTGGCATCATGTCGTCATA
LOC_Os12g19370
Target Sequence 
TCACGGGCTCAGTTGTGCAGCAAATCACAAAGATACATCATACAAGGAAATTGGCTCCAGACATCAACTGCCACTGGCCG
TCTATCAATGGAAGAACCAAATCTGCAGGAGAATTGGTTGCTGGTAACAGCTGATTACTCACAGATCGAGCTGCGTTTAA
TGGCTCATTTTTCTAAAGATACTGCATTGATTGAACTTCTAAGTAAACCAGATGGTGATGTATTTACTATGATTGCTTCA
AGATGGACTGGTAAAGCGGAGTCCTTGATCTGTTCAAAGGAAAGAGAGACCACCAAAAGATTTATTTATGGCATCCTCTA
TGGAATGGGTGCCAACTCTCTAGCAGAACAACTTGAATGCAGCCCAGAAGATGCTGCACAGAAAATCCAAAGTTTTAAGA
GGTTCTTTCCTGGTGTCTCTTCATGGCTACACGAAGCTGTGGCATCATGTCGTCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31810.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis