Browse Element(s) Details


Os.13552.1.S1_at

Description gb:AK073696.1
DB_XREF= gi:32983719
TID=Os.13552.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.13552 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033063H10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033063H10, full insert sequence.
FL= gb:AK073696.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1935011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g19304Os.6172.1.S1_s_at11/1112+11191274..11201686expressed protein
LOC_Os12g19304Os.49580.1.S1_at11/1112+11191274..11201686expressed protein
LOC_Os12g19304Os.49580.1.S2_x_at8/1112+11191274..11201686expressed protein
LOC_Os12g19304OsAffx.19746.1.S1_at6/1112+11191274..11201686expressed protein
LOC_Os12g19304Os.49580.1.S2_at5/1112+11191274..11201686expressed protein
LOC_Os12g19320OsAffx.31808.1.S1_at11/1112+11202976..11203356hypothetical protein
LOC_Os12g19330OsAffx.7639.1.S1_at11/1112+11205904..11206516hypothetical protein
LOC_Os12g19350OsAffx.31809.1.S1_at11/1112+11215979..11230320expressed protein
LOC_Os12g19350Os.13552.1.S1_at11/1112+11215979..11230320expressed protein
LOC_Os12g19350Os.51380.1.S1_at11/1112+11215979..11230320expressed protein
LOC_Os12g19350Os.53379.1.S1_at1/1112+11215979..11230320expressed protein
LOC_Os12g19370OsAffx.31810.1.S1_at11/1112+11239907..11257732DNA polymerase I family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13552.1.S1_at--918--151Chr12:11219803..11219827 (25 bp)
ATTTTGGGCAGGGTCGACAAGTCTT
LOC_Os12g19350
Os.13552.1.S1_at--951--5591Chr12:11219788..11219812 (25 bp)
GACAAGTCTTAGCTGTTTATCCTAG
LOC_Os12g19350
Os.13552.1.S1_at--579--6111Chr12:11216339..11216363 (25 bp)
GAGGGCCACCGGCAGTGAAAATCTC
LOC_Os12g19350
Os.13552.1.S1_at--445--9951Chr12:11216299..11216323 (25 bp)
TACCCCGGCCAGTGTAGTGTGTGAA
LOC_Os12g19350
Os.13552.1.S1_at--828--10791Chr12:11216234..11216258 (25 bp)
TTGTTTTATCTGCACCTTGTCCGCA
LOC_Os12g19350
Os.13552.1.S1_at--503--10791Chr12:11216218..11216242 (25 bp)
TTGTCCGCAGCATGCAGATTGTACT
LOC_Os12g19350
Os.13552.1.S1_at--873--3831Chr12:11216066..11216090 (25 bp)
CTGCTTGGTGTGCTTCGAGTTATTG
LOC_Os12g19350
Os.13552.1.S1_at--523--6071Chr12:11216050..11216074 (25 bp)
GAGTTATTGCAACGCAGGGCACTAC
LOC_Os12g19350
Os.13552.1.S1_at--56--7611Chr12:11216034..11216058 (25 bp)
GGGCACTACAGTCGTATCGTCATAT
LOC_Os12g19350
Os.13552.1.S1_at--553--3171Chr12:11216010..11216030 (21 bp)
AATTGATGCCTTCGTTGCATTGGAA
LOC_Os12g19350
Os.13552.1.S1_at--1132--671Chr12:11215980..11216004 (25 bp)
ATGACGCGGCATTTGTGCATTGCAC
LOC_Os12g19350
Target Sequence 
ATTTTGGGCAGGGTCGACAAGTCTTAGCTGTTTATCCTAGCACAACAGCACTATATAGAGCTACTGTTGCCTCTAATCGT
NAAGAGGAAATCTGACGATTATCTACTCTTGTTTGATGATGACGAGGAGGATGGAAATCTACCACAAAGAGCTGTGCCGT
TCTATAGAGTGGTTCCTCTCCCGGAGGGCCACCGGCAGTGAAAATCTCAGTTGGATCCGTCTTTACCCCGGCCAGTGTAG
TGTGTGAAGATAGGAGTGTGAGAGTGTCTGCCTGACAATGTAGTAATTTTGTTTTATCTGCACCTTGTCCGCAGCATGCA
GATTGTACTACCNAAGTGACTTCTAAGATGTCCAAGGTTCAGCGATCATGTAAATAGGTTGATTCAGTGTTGCTCTATAA
CNAAAANTAAGTGATTTCCCCTTCGAAAAACGCACCGCCGCACACCTTATCTGGCCTCTGCTTGGTGTGCTTCGAGTTAT
TGCAACGCAGGGCACTACAGTCGTATCGTCATATTGTAATTGATGCCTTCGTTGCATTGGAAGATGACGCGGCATTTGTG
CATTGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13552.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis