Browse Element(s) Details


OsAffx.7639.1.S1_at

Description tigr:9640.m01910
TID=OsAffx.7639.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1933011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g19290Os.6467.1.A1_s_at11/1112+11182345..11188916Protein kinase domain containing protein, expressed
LOC_Os12g19290OsAffx.19745.1.S1_at11/1112+11182345..11188916Protein kinase domain containing protein, expressed
LOC_Os12g19304Os.6172.1.S1_s_at11/1112+11191274..11201686expressed protein
LOC_Os12g19304Os.49580.1.S1_at11/1112+11191274..11201686expressed protein
LOC_Os12g19304Os.49580.1.S2_x_at8/1112+11191274..11201686expressed protein
LOC_Os12g19304OsAffx.19746.1.S1_at6/1112+11191274..11201686expressed protein
LOC_Os12g19304Os.49580.1.S2_at5/1112+11191274..11201686expressed protein
LOC_Os12g19320OsAffx.31808.1.S1_at11/1112+11202976..11203356hypothetical protein
LOC_Os12g19330OsAffx.7639.1.S1_at11/1112+11205904..11206516hypothetical protein
LOC_Os12g19350OsAffx.31809.1.S1_at11/1112+11215979..11230320expressed protein
LOC_Os12g19350Os.13552.1.S1_at11/1112+11215979..11230320expressed protein
LOC_Os12g19350Os.51380.1.S1_at11/1112+11215979..11230320expressed protein
LOC_Os12g19350Os.53379.1.S1_at1/1112+11215979..11230320expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7639.1.S1_at--612--5311Chr12:11206445..11206469 (25 bp)
GAAGGTTGGCCACGTCACAGAGTTC
LOC_Os12g19330
OsAffx.7639.1.S1_at--1090--8491Chr12:11206346..11206370 (25 bp)
TGGCAGCTTTTATAGGTCGATAAGG
LOC_Os12g19330
OsAffx.7639.1.S1_at--588--7791Chr12:11206332..11206356 (25 bp)
GGTCGATAAGGTTGGCCACGTCACA
LOC_Os12g19330
OsAffx.7639.1.S1_at--1019--9751Chr12:11206326..11206350 (25 bp)
TAAGGTTGGCCACGTCACAGAGTTC
LOC_Os12g19330
OsAffx.7639.1.S1_at--1088--8492Chr12:11206100..11206251 (25 bp)
TGGCAGCTTTTATAGCTCTGGGCCG
LOC_Os12g19330
OsAffx.7639.1.S1_at--179--10371Chr12:11206093..11206128 (25 bp)
TTTTATAGCTCTGGGCCGGGATGTT
LOC_Os12g19330
OsAffx.7639.1.S1_at--807--7991Chr12:11206075..11206099 (25 bp)
GGATGTTACATTTGTGGTTCACCCC
LOC_Os12g19330
OsAffx.7639.1.S1_at--47--9871Chr12:11206069..11206093 (25 bp)
TACATTTGTGGTTCACCCCAAACGG
LOC_Os12g19330
OsAffx.7639.1.S1_at--599--8571Chr12:11206061..11206085 (25 bp)
TGGTTCACCCCAAACGGCGGCAGGT
LOC_Os12g19330
OsAffx.7639.1.S1_at--904--1391Chr12:11206009..11206033 (25 bp)
AGACGATGGCGCGACTCAGGTCAAC
LOC_Os12g19330
OsAffx.7639.1.S1_at--4--871Chr12:11206004..11206028 (25 bp)
ATGGCGCGACTCAGGTCAACGGTGC
LOC_Os12g19330
Target Sequence 
GAAGGTTGGCCACGTCACAGAGTTCTTTGGAGACGGGCTTCCGGAAAAGAAGTTGCAACTTGTTGACACACCTTGTCCCA
GGCCAGGCCCACTTACATCTGGCAGCTTTTATAGGTCGATAAGGTTGGCCACGTCACAGAGTTCTTTTGAGACGGGCTTC
CGGAAAAGAAGTTGCAACTTGTTGACACACCTTGTCCCAGGCCAGGCCCACTTACATCTGGCAGCTTTTATAGCTCTGGG
CCGGGATGTTACATTTGTGGTTCACCCCAAACGGCGGCAGGTGGCGAAAATGGTGACCAGAGAGGAGGAAGACGATGGCG
CGACTCAGGTCAACGGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7639.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis