Browse Element(s) Details


OsAffx.19746.1.S1_at

Description tigr:9640.m01908
TID=OsAffx.19746.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F12A21.6
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g193046/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g19260OsAffx.19742.1.S1_at11/1112+11163149..11166667pentatricopeptide, putative, expressed
LOC_Os12g19260Os.14173.1.S1_at1/1112+11163149..11166667pentatricopeptide, putative, expressed
LOC_Os12g19270OsAffx.19743.1.S1_at11/1112+11168735..11170567hypothetical protein
LOC_Os12g19280OsAffx.19744.1.S1_at11/1112+11171928..11173479hypothetical protein
LOC_Os12g19290Os.6467.1.A1_s_at11/1112+11182345..11188916Protein kinase domain containing protein, expressed
LOC_Os12g19290OsAffx.19745.1.S1_at11/1112+11182345..11188916Protein kinase domain containing protein, expressed
LOC_Os12g19304Os.6172.1.S1_s_at11/1112+11191274..11201686expressed protein
LOC_Os12g19304Os.49580.1.S1_at11/1112+11191274..11201686expressed protein
LOC_Os12g19304Os.49580.1.S2_x_at8/1112+11191274..11201686expressed protein
LOC_Os12g19304OsAffx.19746.1.S1_at6/1112+11191274..11201686expressed protein
LOC_Os12g19304Os.49580.1.S2_at5/1112+11191274..11201686expressed protein
LOC_Os12g19320OsAffx.31808.1.S1_at11/1112+11202976..11203356hypothetical protein
LOC_Os12g19330OsAffx.7639.1.S1_at11/1112+11205904..11206516hypothetical protein
LOC_Os12g19350OsAffx.31809.1.S1_at11/1112+11215979..11230320expressed protein
LOC_Os12g19350Os.13552.1.S1_at11/1112+11215979..11230320expressed protein
LOC_Os12g19350Os.51380.1.S1_at11/1112+11215979..11230320expressed protein
LOC_Os12g19350Os.53379.1.S1_at1/1112+11215979..11230320expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19746.1.S1_at--173--5711Chr12:11201911..11201935 (25 bp)
GACTCGGAGCTCTCCCGCGGGTACT
NONE
OsAffx.19746.1.S1_at--923--1751Chr12:11201764..11201788 (25 bp)
ACCTGGCACAACGTGCTCATTGGCA
NONE
OsAffx.19746.1.S1_at--1034--3751Chr12:11201749..11201773 (25 bp)
CTCATTGGCATGCAGAAGCGTGCGC
NONE
OsAffx.19746.1.S1_at--376--1671Chr12:11201685..11201709 (25 bp)
AGCCGTTCCCGTCGCTTATCATCGG
NONE
OsAffx.19746.1.S1_at--682--4151Chr12:11201644..11201668 (25 bp)
CGCGCTCAAGGCACCTACGCTGAAG
LOC_Os12g19304
OsAffx.19746.1.S1_at--301--5091Chr12:11201638..11201658 (21 bp)
GCACCTACGCTGAAGCCCAGGATAT
LOC_Os12g19304
OsAffx.19746.1.S1_at--294--4751Chr12:11201355..11201650 (25 bp)
GCTGAAGCCCAGGATATGGCTAAAA
LOC_Os12g19304
OsAffx.19746.1.S1_at--1126--9751Chr12:11201294..11201317 (24 bp)
TAATCTGCCAAAGTTGGATGCCGAT
LOC_Os12g19304
OsAffx.19746.1.S1_at--1106--7971Chr12:11201279..11201303 (25 bp)
GGATGCCGATTTCCATTTTCCACAA
LOC_Os12g19304
OsAffx.19746.1.S1_at--848--9231Chr12:11201268..11201292 (25 bp)
TCCATTTTCCACAAAGTTGCACCTG
LOC_Os12g19304
OsAffx.19746.1.S1_at--420--3371NONE
CACCTGCAAAGAAAAGTGCCCATGG
NONE
Target Sequence 
GACTCGGAGCTCTCCCGCGGGTACTGCGCCTGCCTCGTCTCCGCGCTCGACGGGGCGCGCCCGGAGGAGGTGCTCGACGT
GGACCCGGCCGACCTCGCGCCGCTCGGTGGGGCCGCCGCGGGGACGGGGGCGCGGTCCAGGGCCAGCACCTGGCACAACG
TGCTCATTGGCATGCAGAAGCGTGCGCGGGCGGCCATCGCGGCGCGTGAGGGCAGGCCTGCTGGGGAGCCGTTCCCGTCG
CTTATCATCGGCCGCGACGGCGCCATCCGCGCTCAAGGCACCTACGCTGAAGCCCAGGATATGGCTAAAAATAATCTGCC
AAAGTTGGATGCCGATTTCCATTTTCCACAAAGTTGCACCTGCAAAGAAAAGTGCCCATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19746.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis