Browse Element(s) Details


OsAffx.19744.1.S1_at

Description tigr:9640.m01904
TID=OsAffx.19744.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1928011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g19210NANA12+11148547..11149332transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g19220Os.47463.1.S1_x_at2/1112+11149626..11151784transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g19220Os.14491.2.S1_x_at1/1112+11149626..11151784transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g19230OsAffx.8299.1.S1_x_at1/1112+11154160..11154480hypothetical protein
LOC_Os12g19250OsAffx.1769.1.S1_at1/1112+11159459..11162452retrotransposon protein, putative, unclassified
LOC_Os12g19250OsAffx.20566.1.S1_at1/1112+11159459..11162452retrotransposon protein, putative, unclassified
LOC_Os12g19260OsAffx.19742.1.S1_at11/1112+11163149..11166667pentatricopeptide, putative, expressed
LOC_Os12g19260Os.14173.1.S1_at1/1112+11163149..11166667pentatricopeptide, putative, expressed
LOC_Os12g19270OsAffx.19743.1.S1_at11/1112+11168735..11170567hypothetical protein
LOC_Os12g19280OsAffx.19744.1.S1_at11/1112+11171928..11173479hypothetical protein
LOC_Os12g19290Os.6467.1.A1_s_at11/1112+11182345..11188916Protein kinase domain containing protein, expressed
LOC_Os12g19290OsAffx.19745.1.S1_at11/1112+11182345..11188916Protein kinase domain containing protein, expressed
LOC_Os12g19304Os.6172.1.S1_s_at11/1112+11191274..11201686expressed protein
LOC_Os12g19304Os.49580.1.S1_at11/1112+11191274..11201686expressed protein
LOC_Os12g19304Os.49580.1.S2_x_at8/1112+11191274..11201686expressed protein
LOC_Os12g19304OsAffx.19746.1.S1_at6/1112+11191274..11201686expressed protein
LOC_Os12g19304Os.49580.1.S2_at5/1112+11191274..11201686expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19744.1.S1_at--986--8531Chr12:11172381..11172405 (25 bp)
TGGACGCCGCCAAGGGTCTTCATGA
LOC_Os12g19280
OsAffx.19744.1.S1_at--728--4211Chr12:11172387..11172411 (25 bp)
CCGCCAAGGGTCTTCATGAGGAGCT
LOC_Os12g19280
OsAffx.19744.1.S1_at--269--8991Chr12:11172414..11172438 (25 bp)
TGAAGTCAGTGGAGCCCACCCTGGA
LOC_Os12g19280
OsAffx.19744.1.S1_at--1039--8531Chr12:11172423..11172447 (25 bp)
TGGAGCCCACCCTGGAGCTGTTTTT
LOC_Os12g19280
OsAffx.19744.1.S1_at--33--8551Chr12:11172435..11172459 (25 bp)
TGGAGCTGTTTTTCCCTTCCCGGTG
LOC_Os12g19280
OsAffx.19744.1.S1_at--565--10651Chr12:11172451..11172475 (25 bp)
TTCCCGGTGTAAGGGCAAAGATCTT
LOC_Os12g19280
OsAffx.19744.1.S1_at--339--2811Chr12:11172468..11172492 (25 bp)
AAGATCTTGTGCAACTGGCAACAGA
LOC_Os12g19280
OsAffx.19744.1.S1_at--1054--2551Chr12:11172480..11172504 (25 bp)
AACTGGCAACAGAGCTGGTTCCTGA
LOC_Os12g19280
OsAffx.19744.1.S1_at--577--7551Chr12:11172506..11172530 (25 bp)
GGGCCAACTGCTGTTCGTCGGCTGT
LOC_Os12g19280
OsAffx.19744.1.S1_at--891--2551Chr12:11172511..11172535 (25 bp)
AACTGCTGTTCGTCGGCTGTCTGAG
LOC_Os12g19280
OsAffx.19744.1.S1_at--950--8491Chr12:11172541..11172565 (25 bp)
TGGCAGGGAATGTGGCGGTCGCCGC
LOC_Os12g19280
Target Sequence 
TGGACGCCGCCAAGGGTCTTCATGAGGAGCTGGTGAAGTCAGTGGAGCCCACCCTGGAGCTGTTTTTCCCTTCCCGGTGT
AAGGGCAAAGATCTTGTGCAACTGGCAACAGAGCTGGTTCCTGAGGGGCCAACTGCTGTTCGTCGGCTGTCTGAGGGTGG
TGGCAGGGAATGTGGCGGTCGCCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19744.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis