Browse Element(s) Details


Os.14173.1.S1_at

Description gb:AK107492.1
DB_XREF= gi:32992701
TID=Os.14173.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14173 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-129-D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-129-D03, full insert sequence.
FL= gb:AK102896.1 gb:AK107492.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g192601/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g19180Os.23221.1.A1_at11/1112+11135389..11138969expressed protein
LOC_Os12g19190NANA12+11140108..11143097transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g19200NANA12+11145943..11146302transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g19210NANA12+11148547..11149332transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g19220Os.47463.1.S1_x_at2/1112+11149626..11151784transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g19220Os.14491.2.S1_x_at1/1112+11149626..11151784transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g19230OsAffx.8299.1.S1_x_at1/1112+11154160..11154480hypothetical protein
LOC_Os12g19250OsAffx.1769.1.S1_at1/1112+11159459..11162452retrotransposon protein, putative, unclassified
LOC_Os12g19250OsAffx.20566.1.S1_at1/1112+11159459..11162452retrotransposon protein, putative, unclassified
LOC_Os12g19260OsAffx.19742.1.S1_at11/1112+11163149..11166667pentatricopeptide, putative, expressed
LOC_Os12g19260Os.14173.1.S1_at1/1112+11163149..11166667pentatricopeptide, putative, expressed
LOC_Os12g19270OsAffx.19743.1.S1_at11/1112+11168735..11170567hypothetical protein
LOC_Os12g19280OsAffx.19744.1.S1_at11/1112+11171928..11173479hypothetical protein
LOC_Os12g19290Os.6467.1.A1_s_at11/1112+11182345..11188916Protein kinase domain containing protein, expressed
LOC_Os12g19290OsAffx.19745.1.S1_at11/1112+11182345..11188916Protein kinase domain containing protein, expressed
LOC_Os12g19304Os.6172.1.S1_s_at11/1112+11191274..11201686expressed protein
LOC_Os12g19304Os.49580.1.S1_at11/1112+11191274..11201686expressed protein
LOC_Os12g19304Os.49580.1.S2_x_at8/1112+11191274..11201686expressed protein
LOC_Os12g19304OsAffx.19746.1.S1_at6/1112+11191274..11201686expressed protein
LOC_Os12g19304Os.49580.1.S2_at5/1112+11191274..11201686expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14173.1.S1_at--145--1791Chr08:12715037..12715061 (25 bp)
ACCGTCAAGTTCTAGAGAGCGTACT
NONE
Os.14173.1.S1_at--374--5872Chr12:11163632..11163653 (22 bp)
GAGCGTACTTGGTAAGAGGTTGCCA
LOC_Os12g19260
Os.14173.1.S1_at--594--1971Chr08:12714984..12715008 (25 bp)
ACTGCTGTTCTGCACATTGAGTCAT
NONE
Os.14173.1.S1_at--97--3071Chr08:12714535..12714559 (25 bp)
AATCTATCAGATGCTCATTACGAGA
NONE
Os.14173.1.S1_at--332--5191Chr08:12714506..12714530 (25 bp)
GAATTCGTAGGTCATTTGACTTCGG
NONE
Os.14173.1.S1_at--819--8931Chr08:12714490..12714514 (25 bp)
TGACTTCGGGATTAGAGGCCTGCCT
NONE
Os.14173.1.S1_at--48--6231Chr08:12714476..12714500 (25 bp)
GAGGCCTGCCTTTATTTTTCATGAG
NONE
Os.14173.1.S1_at--268--2712Chr12:11162614..11162636 (23 bp)
AAGCTTGCACTATGACAGTTTGTAA
NONE
Os.14173.1.S1_at--901--1371Chr08:12714376..12714400 (25 bp)
AGACGATAAGACTGCTAGCTACTAT
NONE
Os.14173.1.S1_at--723--5271Chr08:12714342..12714366 (25 bp)
GAATGTCACAAAATCTGGTACTGTT
NONE
Os.14173.1.S1_at--1003--4631Chr08:12714308..12714332 (25 bp)
GCGTTCAACAGCTTGGTTGTCACAA
NONE
Target Sequence 
ACCGTCAAGTTCTAGAGAGCGTACTTGGTAAGAGGTTGCCAAATTCTTGCCTTACTGCTGTTCTGCACATTGAGTCATGA
GTGATGCACTTTAGGACCAAGTTTGGTGCAATTGAGTCAAGATGGTGCAGTGCGAGAAACAACAATATGATGATCATGGC
AGAATGAAGCAATGAAGAAAAATTCATGTGATGGCTATATGNTCATTTAATCTATCAGATGCTCATTACGAGATTTTGAA
TTCGTAGGTCATTTGACTTCGGGATTAGAGGCCTGCCTTTATTTTTCATGAGCATGTTCATTTTCAGTACTTTGAAATTT
TATAAGCTTGCACTATGACAGTTTGTAATATTGTGCAGTTGGTTAAAAGACGATAAGACTGCTAGCTACTATCATAAACA
TGAATGTCACAAAATCTGGTACTGTTGTATAAATTGCGTTCAACAGCTTGGTTGTCACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14173.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis