Browse Element(s) Details


OsAffx.19742.1.S1_at

Description tigr:9640.m01902
TID=OsAffx.19742.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1926011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g19180Os.23221.1.A1_at11/1112+11135389..11138969expressed protein
LOC_Os12g19190NANA12+11140108..11143097transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g19200NANA12+11145943..11146302transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g19210NANA12+11148547..11149332transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g19220Os.47463.1.S1_x_at2/1112+11149626..11151784transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g19220Os.14491.2.S1_x_at1/1112+11149626..11151784transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g19230OsAffx.8299.1.S1_x_at1/1112+11154160..11154480hypothetical protein
LOC_Os12g19250OsAffx.1769.1.S1_at1/1112+11159459..11162452retrotransposon protein, putative, unclassified
LOC_Os12g19250OsAffx.20566.1.S1_at1/1112+11159459..11162452retrotransposon protein, putative, unclassified
LOC_Os12g19260OsAffx.19742.1.S1_at11/1112+11163149..11166667pentatricopeptide, putative, expressed
LOC_Os12g19260Os.14173.1.S1_at1/1112+11163149..11166667pentatricopeptide, putative, expressed
LOC_Os12g19270OsAffx.19743.1.S1_at11/1112+11168735..11170567hypothetical protein
LOC_Os12g19280OsAffx.19744.1.S1_at11/1112+11171928..11173479hypothetical protein
LOC_Os12g19290Os.6467.1.A1_s_at11/1112+11182345..11188916Protein kinase domain containing protein, expressed
LOC_Os12g19290OsAffx.19745.1.S1_at11/1112+11182345..11188916Protein kinase domain containing protein, expressed
LOC_Os12g19304Os.6172.1.S1_s_at11/1112+11191274..11201686expressed protein
LOC_Os12g19304Os.49580.1.S1_at11/1112+11191274..11201686expressed protein
LOC_Os12g19304Os.49580.1.S2_x_at8/1112+11191274..11201686expressed protein
LOC_Os12g19304OsAffx.19746.1.S1_at6/1112+11191274..11201686expressed protein
LOC_Os12g19304Os.49580.1.S2_at5/1112+11191274..11201686expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19742.1.S1_at--738--5311Chr12:11164939..11164963 (25 bp)
GAAGGATTGCATTTCTTCAATTCGA
LOC_Os12g19260
OsAffx.19742.1.S1_at--185--10791Chr12:11164906..11164930 (25 bp)
TTGTACTCGTTAAAGCCTGTGGCTG
LOC_Os12g19260
OsAffx.19742.1.S1_at--682--3891Chr12:11164890..11164914 (25 bp)
CTGTGGCTGAGCATTATACCTGTAT
LOC_Os12g19260
OsAffx.19742.1.S1_at--492--6751Chr12:11164816..11164840 (25 bp)
GTTCAGGGAATGCAGATCCAACCAA
LOC_Os12g19260
OsAffx.19742.1.S1_at--333--7331Chr12:11164776..11164800 (25 bp)
GTGCATTGCTTGGAGCATGCCGCGT
LOC_Os12g19260
OsAffx.19742.1.S1_at--977--5911Chr12:11164764..11164788 (25 bp)
GAGCATGCCGCGTACACAAGAATCA
LOC_Os12g19260
OsAffx.19742.1.S1_at--290--1252Chr11:1242360..1242503 (24 bp)
AGATAGCATGGCTTGCAGCTGAGAA
NONE
OsAffx.19742.1.S1_at--881--5191Chr12:11164705..11164729 (25 bp)
GAATTGGAACCTTGCAAGGCCTCAA
LOC_Os12g19260
OsAffx.19742.1.S1_at--609--8431Chr12:11164688..11164712 (25 bp)
GGCCTCAAATTATGTCTTGCTGTCA
LOC_Os12g19260
OsAffx.19742.1.S1_at--743--1551Chr12:11163774..11163798 (25 bp)
AGCTTCCTGGAAGCCTAGGCATTGT
LOC_Os12g19260
OsAffx.19742.1.S1_at--66--3611Chr12:11163715..11163739 (25 bp)
CATTGCTTGAGCTATCTTTGGAGTT
LOC_Os12g19260
Target Sequence 
GAAGGATTGCATTTCTTCAATTCGATGATAAAATTGTACTCGTTAAAGCCTGTGGCTGAGCATTATACCTGTATGGTTGA
TCTTCTTGGAAGAGCTGGGAGACTAAGAGAGGCATTTGAACTTGTTCAGGGAATGCAGATCCAACCAAATGCTGGTGTCT
GGGGTGCATTGCTTGGAGCATGCCGCGTACACAAGAATCACGAGATAGCATGGCTTGCAGCTGAGAAGTTATTTGAATTG
GAACCTTGCAAGGCCTCAAATTATGTCTTGCTGTCAAACATCTGTGTGGAGGCAGGGAAATGGGATGATGCTGACAAGGT
GAGGGTTTTGATGAAAGAGAGCATATTACGATCATGCAATATTCATATCAGCAATAAAATGTTGGATAATTCTGGATATA
GGTGTTATGGAGCTTCCTGGAAGCCTAGGCATTGTTTGTGGAAGTGGCAAGAACAAAAGGATTTCAAGGCATTGCTTGAG
CTATCTTTGGAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19742.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis