Browse Element(s) Details


Os.49580.1.S2_x_at

Description gb:C26243
DB_XREF= gi:2310088
DB_XREF=C26243
CLONE=C11934_1A
TID=Os.49580.1
CNT=5
FEA=FLmRNA
TIER=ConsEnd
STK=0
UG=Os.49580 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-108-B04, full insert sequence
FL= gb:AK112053.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g193048/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g19260OsAffx.19742.1.S1_at11/1112+11163149..11166667pentatricopeptide, putative, expressed
LOC_Os12g19260Os.14173.1.S1_at1/1112+11163149..11166667pentatricopeptide, putative, expressed
LOC_Os12g19270OsAffx.19743.1.S1_at11/1112+11168735..11170567hypothetical protein
LOC_Os12g19280OsAffx.19744.1.S1_at11/1112+11171928..11173479hypothetical protein
LOC_Os12g19290Os.6467.1.A1_s_at11/1112+11182345..11188916Protein kinase domain containing protein, expressed
LOC_Os12g19290OsAffx.19745.1.S1_at11/1112+11182345..11188916Protein kinase domain containing protein, expressed
LOC_Os12g19304Os.6172.1.S1_s_at11/1112+11191274..11201686expressed protein
LOC_Os12g19304Os.49580.1.S1_at11/1112+11191274..11201686expressed protein
LOC_Os12g19304Os.49580.1.S2_x_at8/1112+11191274..11201686expressed protein
LOC_Os12g19304OsAffx.19746.1.S1_at6/1112+11191274..11201686expressed protein
LOC_Os12g19304Os.49580.1.S2_at5/1112+11191274..11201686expressed protein
LOC_Os12g19320OsAffx.31808.1.S1_at11/1112+11202976..11203356hypothetical protein
LOC_Os12g19330OsAffx.7639.1.S1_at11/1112+11205904..11206516hypothetical protein
LOC_Os12g19350OsAffx.31809.1.S1_at11/1112+11215979..11230320expressed protein
LOC_Os12g19350Os.13552.1.S1_at11/1112+11215979..11230320expressed protein
LOC_Os12g19350Os.51380.1.S1_at11/1112+11215979..11230320expressed protein
LOC_Os12g19350Os.53379.1.S1_at1/1112+11215979..11230320expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49580.1.S2_x_at--967--3291Chr12:11196860..11196884 (25 bp)
CAAATTGGCTGTTCATTGGCAGACG
LOC_Os12g19304
Os.49580.1.S2_x_at--625--1391Chr12:11196840..11196864 (25 bp)
AGACGCTGCTTCAAGTTCTGCATAT
LOC_Os12g19304
Os.49580.1.S2_x_at--151--471Chr12:11196789..11196813 (25 bp)
ATCTCCTCCTTCTTTACATGTTATT
LOC_Os12g19304
Os.49580.1.S2_x_at--646--9611Chr12:11196735..11196759 (25 bp)
TCATGCTCATGAACTTGTACCTACA
LOC_Os12g19304
Os.49580.1.S2_x_at--330--2111Chr12:11196707..11196731 (25 bp)
ACATGCACTTCTTCAAACGTTGTAG
LOC_Os12g19304
Os.49580.1.S2_x_at--1060--4911Chr12:11196541..11196565 (25 bp)
GCATTTGCCCAAATACCAGGTCTTA
LOC_Os12g19304
Os.49580.1.S2_x_at--629--1011Chr12:11196524..11196548 (25 bp)
AGGTCTTAATGTCTGGTATGGCCCG
LOC_Os12g19304
Os.49580.1.S2_x_at--922--8571Chr12:11196511..11196535 (25 bp)
TGGTATGGCCCGGATTCTTATATGG
LOC_Os12g19304
Os.49580.1.S2_x_at--77--351NONE
ATAAATGCCTTGTTGCCACGGCTAC
NONE
Os.49580.1.S2_x_at--286--4391NONE
GCCACGGCTACATTACTACCAGGAT
NONE
Os.49580.1.S2_x_at--201--1731NONE
ACCAGGATGGTAACTTGTATTGTTC
NONE
Target Sequence 
CAAATTGGCTGTTCATTGGCAGACGCTGCTTCAAGTTCTGCATATACACATTTTTTGAAAGAAGCATCAAGATCTCCTCC
TTCTTTACATGTTATTTATATCAATACTTCTTTGGAAACAAAAGCTCATGCTCATGAACTTGTACCTACAATAACATGCA
CTTCTTCAAACGTTGTAGCAACTATATTACAGGCATTTGCCCAAATACCAGGTCTTAATGTCTGGTATGGCCCGGATTCT
TATATGGGTGCAAACATTGCGGATCTATTTCAGAGAATGGCTGTCATGTCAGATGAGGAAATTGCAGAAGTACATCCAAG
NCACAACAAAAAATCTATAAATGCCTTGTTGCCACGGCTACATTACTACCAGGATGGTAACTTGTATTGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49580.1.S2_x_at     

Putative homologies in rice

Putative homologies in arabidopsis