Browse Element(s) Details


OsAffx.31809.1.S1_at

Description tigr:9640.m01912
TID=OsAffx.31809.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1935011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g19304Os.6172.1.S1_s_at11/1112+11191274..11201686expressed protein
LOC_Os12g19304Os.49580.1.S1_at11/1112+11191274..11201686expressed protein
LOC_Os12g19304Os.49580.1.S2_x_at8/1112+11191274..11201686expressed protein
LOC_Os12g19304OsAffx.19746.1.S1_at6/1112+11191274..11201686expressed protein
LOC_Os12g19304Os.49580.1.S2_at5/1112+11191274..11201686expressed protein
LOC_Os12g19320OsAffx.31808.1.S1_at11/1112+11202976..11203356hypothetical protein
LOC_Os12g19330OsAffx.7639.1.S1_at11/1112+11205904..11206516hypothetical protein
LOC_Os12g19350OsAffx.31809.1.S1_at11/1112+11215979..11230320expressed protein
LOC_Os12g19350Os.13552.1.S1_at11/1112+11215979..11230320expressed protein
LOC_Os12g19350Os.51380.1.S1_at11/1112+11215979..11230320expressed protein
LOC_Os12g19350Os.53379.1.S1_at1/1112+11215979..11230320expressed protein
LOC_Os12g19370OsAffx.31810.1.S1_at11/1112+11239907..11257732DNA polymerase I family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31809.1.S1_at--359--9151Chr12:11227396..11227420 (25 bp)
TGCGTCTGTTCGAAATGACATCTTG
LOC_Os12g19350
OsAffx.31809.1.S1_at--791--3871Chr12:11227391..11227415 (25 bp)
CTGTTCGAAATGACATCTTGCTGCC
LOC_Os12g19350
OsAffx.31809.1.S1_at--779--10712Chr12:11227022..11227398 (25 bp)
TTGCTGCCAGCTCCAGAGATGGTTG
LOC_Os12g19350
OsAffx.31809.1.S1_at--821--6011Chr12:11221973..11221997 (25 bp)
GAGAGTGCCCAAAAGTATGAGATAA
LOC_Os12g19350
OsAffx.31809.1.S1_at--1038--1111Chr12:11221949..11221973 (25 bp)
AGTCCAGGACTGTCATTTTGGTTTC
LOC_Os12g19350
OsAffx.31809.1.S1_at--622--4891Chr12:11221923..11221942 (20 bp)
GCTTTTACTATAACAATCAGATCAG
LOC_Os12g19350
OsAffx.31809.1.S1_at--160--411Chr12:11221634..11221656 (23 bp)
ATCAGATCAGATATTGCCACGACAC
LOC_Os12g19350
OsAffx.31809.1.S1_at--529--6511Chr12:11221625..11221649 (25 bp)
GATATTGCCACGACACTAGTGTCAG
LOC_Os12g19350
OsAffx.31809.1.S1_at--1109--2171Chr12:11221613..11221637 (25 bp)
ACACTAGTGTCAGGTCTCCCATGAA
LOC_Os12g19350
OsAffx.31809.1.S1_at--705--1031Chr12:11221602..11221626 (25 bp)
AGGTCTCCCATGAATCGGTTATGCC
LOC_Os12g19350
OsAffx.31809.1.S1_at--883--3511Chr12:11221594..11221618 (25 bp)
CATGAATCGGTTATGCCCTCAGGCA
LOC_Os12g19350
Target Sequence 
TGCGTCTGTTCGAAATGACATCTTGCTGCCAGCTCCAGAGATGGTTGATAAACAGGTTGATGCTACGTTGATTCGGCTTC
GTGCTTTATATACACGTGCCAAAGAACTTTGTGAGAGTGAAGTCAGTGCATCGTCTGCTTTGGTTGGACTATTGGATGGT
TTGTTGCAATCTGGAACTTCAGCTGCACAACGAAAAAAGATAGAAGTTGGTGAGCAGAAAAAGAAGAGGATGAAGTCTGA
TACAGATACTACACGATTCTCCTCTGCATCTATGAGGAGCCAACTTGACCAAGCTACAAACCTGAAAGGAGAACAGGTTG
CAGCTAAGGTCAAATCAGACGAAGAAAAAGATGAATGGTTTGTGGTGAAGGTGATACATTTCGATAAGGAAACAAAAGAA
TATGAGGTACTTGATGAGGAGCCAGGTGACGATGAAGAGAGTGCCCAAAAGTATGAGATAAGTCCAGGACTGTCATTTTG
GTTTCTTGTTTGCTTTTACTATAACAATCAGATCAGATATTGCCACGACACTAGTGTCAGGTCTCCCATGAATCGGTTAT
GCCCTCAGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31809.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis