Browse Element(s) Details


Os.6172.1.S1_s_at

Description gb:BI804120
DB_XREF= gi:16576824
DB_XREF=H128D02
CLONE=H128D02
TID=Os.6172.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.6172 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_199832.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1930411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g19260OsAffx.19742.1.S1_at11/1112+11163149..11166667pentatricopeptide, putative, expressed
LOC_Os12g19260Os.14173.1.S1_at1/1112+11163149..11166667pentatricopeptide, putative, expressed
LOC_Os12g19270OsAffx.19743.1.S1_at11/1112+11168735..11170567hypothetical protein
LOC_Os12g19280OsAffx.19744.1.S1_at11/1112+11171928..11173479hypothetical protein
LOC_Os12g19290Os.6467.1.A1_s_at11/1112+11182345..11188916Protein kinase domain containing protein, expressed
LOC_Os12g19290OsAffx.19745.1.S1_at11/1112+11182345..11188916Protein kinase domain containing protein, expressed
LOC_Os12g19304Os.6172.1.S1_s_at11/1112+11191274..11201686expressed protein
LOC_Os12g19304Os.49580.1.S1_at11/1112+11191274..11201686expressed protein
LOC_Os12g19304Os.49580.1.S2_x_at8/1112+11191274..11201686expressed protein
LOC_Os12g19304OsAffx.19746.1.S1_at6/1112+11191274..11201686expressed protein
LOC_Os12g19304Os.49580.1.S2_at5/1112+11191274..11201686expressed protein
LOC_Os12g19320OsAffx.31808.1.S1_at11/1112+11202976..11203356hypothetical protein
LOC_Os12g19330OsAffx.7639.1.S1_at11/1112+11205904..11206516hypothetical protein
LOC_Os12g19350OsAffx.31809.1.S1_at11/1112+11215979..11230320expressed protein
LOC_Os12g19350Os.13552.1.S1_at11/1112+11215979..11230320expressed protein
LOC_Os12g19350Os.51380.1.S1_at11/1112+11215979..11230320expressed protein
LOC_Os12g19350Os.53379.1.S1_at1/1112+11215979..11230320expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6172.1.S1_s_at--435--10051Chr12:11193354..11193378 (25 bp)
TAGTTGCCTATCAGGCTAGCCGATT
LOC_Os12g19304
Os.6172.1.S1_s_at--90--6571Chr12:11193333..11193357 (25 bp)
GATTCAATGCTAAGACTCCTCTGGG
LOC_Os12g19304
Os.6172.1.S1_s_at--1012--7371Chr12:11193285..11193309 (25 bp)
GTGAGCCCATTTTGCATATGCGACA
LOC_Os12g19304
Os.6172.1.S1_s_at--722--1251Chr12:11191689..11191713 (25 bp)
AGATTACCAGACAAGCTCGTGCACC
LOC_Os12g19304
Os.6172.1.S1_s_at--967--2691Chr12:11191677..11191701 (25 bp)
AAGCTCGTGCACCATGTTATCCATG
LOC_Os12g19304
Os.6172.1.S1_s_at--346--5911Chr12:11191620..11191644 (25 bp)
GAGCTCTATTAATTTCGTCCACCTG
LOC_Os12g19304
Os.6172.1.S1_s_at--691--631Chr12:11191578..11191602 (25 bp)
AGTTACCCCGACTGAATGCAACCTT
LOC_Os12g19304
Os.6172.1.S1_s_at--584--5271Chr12:11191565..11191589 (25 bp)
GAATGCAACCTTCAGCTCAAGAGTG
LOC_Os12g19304
Os.6172.1.S1_s_at--457--5151Chr12:11191541..11191565 (25 bp)
GCAACTACCAACTTTGTGGCCGATG
LOC_Os12g19304
Os.6172.1.S1_s_at--275--6051Chr12:11191514..11191538 (25 bp)
GAGATATCCCTGTTCATGGCTTTGC
LOC_Os12g19304
Os.6172.1.S1_s_at--735--9631Chr12:11191501..11191525 (25 bp)
TCATGGCTTTGCTACTGGTGGAAAA
LOC_Os12g19304
Target Sequence 
TAGTTGCCTATCAGGCTAGCCGATTCAATGCTAAGACTCCTCTGGGAAAATTGGTTGCAGAGNNTTGGGTGTGAGCCCAT
TTTGCATATGCGACATTTCCAGGCAACAAAGAGATTACCAGACAAGCTCGTGCACCATGTTATCCATGGTAAAGGAGAAC
CTACATCATAGATGTTCCTGGAGCTCTATTAATTTCGTCCACCTGGTTACGGAAAACACCACAGTTACCCCGACTGAATG
CAACCTTCAGCTCAAGAGTGCAACTACCAACTTTGTGGCCGATGATGAGATATCCCTGTTCATGGCTTTGCTACTGGTGG
AAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6172.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis