Browse Element(s) Details


OsAffx.19745.1.S1_at

Description tigr:9640.m01906
TID=OsAffx.19745.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=protein kinase MK6
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1929011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g19250OsAffx.1769.1.S1_at1/1112+11159459..11162452retrotransposon protein, putative, unclassified
LOC_Os12g19250OsAffx.20566.1.S1_at1/1112+11159459..11162452retrotransposon protein, putative, unclassified
LOC_Os12g19260OsAffx.19742.1.S1_at11/1112+11163149..11166667pentatricopeptide, putative, expressed
LOC_Os12g19260Os.14173.1.S1_at1/1112+11163149..11166667pentatricopeptide, putative, expressed
LOC_Os12g19270OsAffx.19743.1.S1_at11/1112+11168735..11170567hypothetical protein
LOC_Os12g19280OsAffx.19744.1.S1_at11/1112+11171928..11173479hypothetical protein
LOC_Os12g19290Os.6467.1.A1_s_at11/1112+11182345..11188916Protein kinase domain containing protein, expressed
LOC_Os12g19290OsAffx.19745.1.S1_at11/1112+11182345..11188916Protein kinase domain containing protein, expressed
LOC_Os12g19304Os.6172.1.S1_s_at11/1112+11191274..11201686expressed protein
LOC_Os12g19304Os.49580.1.S1_at11/1112+11191274..11201686expressed protein
LOC_Os12g19304Os.49580.1.S2_x_at8/1112+11191274..11201686expressed protein
LOC_Os12g19304OsAffx.19746.1.S1_at6/1112+11191274..11201686expressed protein
LOC_Os12g19304Os.49580.1.S2_at5/1112+11191274..11201686expressed protein
LOC_Os12g19320OsAffx.31808.1.S1_at11/1112+11202976..11203356hypothetical protein
LOC_Os12g19330OsAffx.7639.1.S1_at11/1112+11205904..11206516hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0009524cellular_componentphragmoplast
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19745.1.S1_at--1039--5131Chr12:11187878..11187902 (25 bp)
GCAAACTTCATCAAAGGCAGGTCCT
LOC_Os12g19290
OsAffx.19745.1.S1_at--646--6331Chr12:11188156..11188180 (25 bp)
GATGCTTTCCTCCAAGGACACGAAT
LOC_Os12g19290
OsAffx.19745.1.S1_at--1077--2631Chr12:11188202..11188226 (25 bp)
AACCTTGAACTATCAGATGATCCTG
LOC_Os12g19290
OsAffx.19745.1.S1_at--698--5491Chr12:11188226..11188368 (25 bp)
GAACATCCAGGAATAGCTCAAGTAA
LOC_Os12g19290
OsAffx.19745.1.S1_at--860--9751Chr12:11188379..11188403 (25 bp)
TAACAAGCCAACGAGGCGGACCTTT
LOC_Os12g19290
OsAffx.19745.1.S1_at--160--8331Chr12:11188393..11188417 (25 bp)
GGCGGACCTTTAAATCAATATTGCA
LOC_Os12g19290
OsAffx.19745.1.S1_at--1094--5391Chr12:11188515..11188539 (25 bp)
GAACCTCAAAGCAGTTCCTTGAACT
LOC_Os12g19290
OsAffx.19745.1.S1_at--766--2011Chr12:11188537..11188561 (25 bp)
ACTCAACGCCATCACAATTGGATCA
LOC_Os12g19290
OsAffx.19745.1.S1_at--915--3171Chr12:11188552..11188576 (25 bp)
AATTGGATCAGTTGCCCGAGAGCCT
LOC_Os12g19290
OsAffx.19745.1.S1_at--263--3751Chr12:11188588..11188612 (25 bp)
CTCACTCTAGTATCTCCTCAGAAGA
LOC_Os12g19290
OsAffx.19745.1.S1_at--797--9251Chr12:11188602..11188626 (25 bp)
TCCTCAGAAGATTCACAGTCGCGGC
LOC_Os12g19290
Target Sequence 
GCAAACTTCATCAAAGGCAGGTCCTTGGAGAAAGATGCTTTCCTCCAAGGACACGAATTTTCTCAATTTTACCTACAAAA
ACCTTGAACTATCAGATGATCCTGAACATCCAGGAATAGCTCAAGTAAAGAAAAAGAATAACAAGCCAACGAGGCGGACC
TTTAAATCAATATTGCATGAATTTGCTGATACTGAAGAGGAACCTCAAAGCAGTTCCTTGAACTCAACGCCATCACAATT
GGATCAGTTGCCCGAGAGCCTTGAGCCTTCTCCTCACTCTAGTATCTCCTCAGAAGATTCACAGTCGCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19745.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis