Browse Element(s) Details


OsAffx.31808.1.S1_at

Description tigr:9640.m01909
TID=OsAffx.31808.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1932011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g19290Os.6467.1.A1_s_at11/1112+11182345..11188916Protein kinase domain containing protein, expressed
LOC_Os12g19290OsAffx.19745.1.S1_at11/1112+11182345..11188916Protein kinase domain containing protein, expressed
LOC_Os12g19304Os.6172.1.S1_s_at11/1112+11191274..11201686expressed protein
LOC_Os12g19304Os.49580.1.S1_at11/1112+11191274..11201686expressed protein
LOC_Os12g19304Os.49580.1.S2_x_at8/1112+11191274..11201686expressed protein
LOC_Os12g19304OsAffx.19746.1.S1_at6/1112+11191274..11201686expressed protein
LOC_Os12g19304Os.49580.1.S2_at5/1112+11191274..11201686expressed protein
LOC_Os12g19320OsAffx.31808.1.S1_at11/1112+11202976..11203356hypothetical protein
LOC_Os12g19330OsAffx.7639.1.S1_at11/1112+11205904..11206516hypothetical protein
LOC_Os12g19350OsAffx.31809.1.S1_at11/1112+11215979..11230320expressed protein
LOC_Os12g19350Os.13552.1.S1_at11/1112+11215979..11230320expressed protein
LOC_Os12g19350Os.51380.1.S1_at11/1112+11215979..11230320expressed protein
LOC_Os12g19350Os.53379.1.S1_at1/1112+11215979..11230320expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31808.1.S1_at--1082--10591Chr12:11203006..11203030 (25 bp)
TTCTGCGGCGCTGTTGACACTTACG
LOC_Os12g19320
OsAffx.31808.1.S1_at--990--4571Chr12:11203013..11203037 (25 bp)
GCGCTGTTGACACTTACGCCTGGGT
LOC_Os12g19320
OsAffx.31808.1.S1_at--1142--8811Chr12:11203077..11203101 (25 bp)
TGTTGGATTGGGACTGCGTCGTGGC
LOC_Os12g19320
OsAffx.31808.1.S1_at--498--4651Chr12:11203092..11203116 (25 bp)
GCGTCGTGGCTGGTTGCTACTGCTA
LOC_Os12g19320
OsAffx.31808.1.S1_at--292--8491Chr12:11203098..11203122 (25 bp)
TGGCTGGTTGCTACTGCTATTGCTT
LOC_Os12g19320
OsAffx.31808.1.S1_at--428--10731Chr12:11203105..11203129 (25 bp)
TTGCTACTGCTATTGCTTGCTCAAA
LOC_Os12g19320
OsAffx.31808.1.S1_at--874--2571Chr12:11203137..11203161 (25 bp)
AACGATATCGTTGCTTTCGCATTTC
LOC_Os12g19320
OsAffx.31808.1.S1_at--801--251Chr12:11203141..11203165 (25 bp)
ATATCGTTGCTTTCGCATTTCTTCT
LOC_Os12g19320
OsAffx.31808.1.S1_at--1026--4031Chr12:11203145..11203169 (25 bp)
CGTTGCTTTCGCATTTCTTCTGTTC
LOC_Os12g19320
OsAffx.31808.1.S1_at--201--5911Chr12:11203240..11203264 (25 bp)
GAGCTCCGCGCTACTGGGCCTGGAC
LOC_Os12g19320
OsAffx.31808.1.S1_at--814--8531Chr12:11203260..11203284 (25 bp)
TGGACGCCGCGTTGCCGCACTCGTG
LOC_Os12g19320
Target Sequence 
TTCTGCGGCGCTGTTGACACTTACGCCTGGGTGCTCGAGGAGGCCAAGCACCACGACGATGACAACGTTGTTGTTGGATT
GGGACTGCGTCGTGGCTGGTTGCTACTGCTATTGCTTGCTCAAAGCCAACCAACGATATCGTTGCTTTCGCATTTCTTCT
GTTCTTGCTATTTTGGGCGTCACAGCGACATCGGCATCAGCGAGGACTCCGTGGGAGACGGTGCCAGCCGGGACGAGCTC
CGCGCTACTGGGCCTGGACGCCGCGTTGCCGCACTCGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31808.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis