Browse Element(s) Details


OsAffx.8299.1.S1_x_at

Description gb:NM_195690.1
DB_XREF= gi:37532739
TID=OsAffx.8299.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0065C16.9), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1770011/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os12g192301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g17650Os.46489.1.S1_at11/1110+8588927..8594834Glycosyl hydrolase family 1 protein, expressed
LOC_Os10g17660Os.12777.1.S1_a_at11/1110+8596569..8597679Profilin A, putative, expressed
LOC_Os10g17670OsAffx.8300.1.S1_at11/1110+8603911..8605502hypothetical protein
LOC_Os10g17680Os.12777.1.S1_a_at11/1110+8605864..8606978Profilin A, putative, expressed
LOC_Os10g17690OsAffx.20544.1.S1_x_at11/1110+8608595..8611179NB-ARC domain containing protein, expressed
LOC_Os10g17700OsAffx.8299.1.S1_x_at11/1110+8614779..8615174retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g17710Os.41695.15.S1_s_at9/1110+8617020..8620555calcineurin-like phosphoesterase family protein, putative
LOC_Os10g17710Os.41695.2.S1_x_at5/1110+8617020..8620555calcineurin-like phosphoesterase family protein, putative
LOC_Os10g17710Os.41695.5.S1_x_at5/1110+8617020..8620555calcineurin-like phosphoesterase family protein, putative
LOC_Os10g17710Os.41695.3.S1_x_at5/1110+8617020..8620555calcineurin-like phosphoesterase family protein, putative
LOC_Os10g17724NANA10+8626237..8632696Zinc knuckle family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8299.1.S1_x_at--913--10071Chr10:8615077..8615101 (25 bp)
TAGGTGGCGGCTTAGCGGCACGGGA
LOC_Os10g17700
OsAffx.8299.1.S1_x_at--523--8011Chr10:8615031..8615055 (25 bp)
GGAGGCCTCTTCGACGACGATCGAC
LOC_Os10g17700
OsAffx.8299.1.S1_x_at--88--7592Chr08:6759890..6759914 (25 bp)
GGGCTCCGGGATGACCTAAAGAACA
NONE
OsAffx.8299.1.S1_x_at--290--12Chr12:372253..372273 (21 bp)
ACAAAATGAGGGAGGTTAGAGAACG
NONE
OsAffx.8299.1.S1_x_at--828--7991Chr10:8614928..8614952 (25 bp)
GGAGGCCGCAGCGAGTTAGGGCGCT
LOC_Os10g17700
OsAffx.8299.1.S1_x_at--831--8376Chr12:11154218..11154241 (24 bp)
GGCGACCATGGCGATGCTCACCGGT
LOC_Os12g19230
OsAffx.8299.1.S1_x_at--51--871Chr10:8614886..8614910 (25 bp)
ATGGCGATGCTCACCGGTGCAAGAG
LOC_Os10g17700
OsAffx.8299.1.S1_x_at--720--4051Chr10:8614882..8614906 (25 bp)
CGATGCTCACCGGTGCAAGAGGGAT
LOC_Os10g17700
OsAffx.8299.1.S1_x_at--747--1331Chr10:8614865..8614889 (25 bp)
AGAGGGATGGCGGATTCCGGCTGCG
LOC_Os10g17700
OsAffx.8299.1.S1_x_at--1159--9271Chr10:8614850..8614874 (25 bp)
TCCGGCTGCGGATTCGGCCGACTGA
LOC_Os10g17700
OsAffx.8299.1.S1_x_at--979--4111Chr10:8614809..8614833 (25 bp)
CGCTCGAGGAGGTGAACACAACGGC
LOC_Os10g17700
Target Sequence 
TAGGTGGCGGCTTAGCGGCACGGGAGAGAGGGAGGGAGGGAGGAGGGGAGGCCTCTTCGACGACGATCGACGACGGCGAG
CGGCGGCGATGGCAGGACGGGCTCCGGGATGACCTAAAGAACAAAATGAGGGAGGTTAGAGAACGAGAGGGAGGCCGCAG
CGAGTTAGGGCGCTGGCCGAAGGCGGCGACCATGGCGATGCTCACCGGTGCAAGAGGGATGGCGGATTCCGGCTGCGGAT
TCGGCCGACTGAGGGGTGGACGGGGTGGCGCTCGAGGAGGTGAACACAACGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8299.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis