Browse Element(s) Details


Os.46489.1.S1_at

Description gb:AK071372.1
DB_XREF= gi:32981395
TID=Os.46489.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46489 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative beta-glucosidase (OSJNBa0065C16.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023094F17, full insert sequence.
FL= gb:AK071372.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1765011/11Glycosyl hydrolase family 1 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g17610Os.45212.1.S1_x_at10/1110+8564391..8570345retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g17620OsAffx.25156.1.S1_x_at11/1110+8571616..8574308hypothetical protein
LOC_Os10g17620OsAffx.25156.4.S1_x_at3/1110+8571616..8574308hypothetical protein
LOC_Os10g17620OsAffx.25156.5.S1_x_at3/1110+8571616..8574308hypothetical protein
LOC_Os10g17630Os.49402.1.S1_at10/1110+8576763..8579068B3 DNA binding domain containing protein, expressed
LOC_Os10g17640OsAffx.6684.1.S1_at11/1110+8585708..8585996hypothetical protein
LOC_Os10g17650Os.46489.1.S1_at11/1110+8588927..8594834Glycosyl hydrolase family 1 protein, expressed
LOC_Os10g17660Os.12777.1.S1_a_at11/1110+8596569..8597679Profilin A, putative, expressed
LOC_Os10g17670OsAffx.8300.1.S1_at11/1110+8603911..8605502hypothetical protein
LOC_Os10g17680Os.12777.1.S1_a_at11/1110+8605864..8606978Profilin A, putative, expressed
LOC_Os10g17690OsAffx.20544.1.S1_x_at11/1110+8608595..8611179NB-ARC domain containing protein, expressed
LOC_Os10g17700OsAffx.8299.1.S1_x_at11/1110+8614779..8615174retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g17710Os.41695.15.S1_s_at9/1110+8617020..8620555calcineurin-like phosphoesterase family protein, putative
LOC_Os10g17710Os.41695.2.S1_x_at5/1110+8617020..8620555calcineurin-like phosphoesterase family protein, putative
LOC_Os10g17710Os.41695.5.S1_x_at5/1110+8617020..8620555calcineurin-like phosphoesterase family protein, putative
LOC_Os10g17710Os.41695.3.S1_x_at5/1110+8617020..8620555calcineurin-like phosphoesterase family protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46489.1.S1_at--523--9611Chr10:8594215..8594239 (25 bp)
TCATCTCTCTGAAGAATGCCCTCAA
LOC_Os10g17650
Os.46489.1.S1_at--207--6711Chr10:8594409..8594433 (25 bp)
GTTCGCGGGTATTTTGCATGGTCTC
LOC_Os10g17650
Os.46489.1.S1_at--1034--4991Chr10:8594424..8594448 (25 bp)
GCATGGTCTCTTCTTGACAACTGGG
LOC_Os10g17650
Os.46489.1.S1_at--1082--4711Chr10:8594457..8594481 (25 bp)
GCTGGATACACCTCGAGATTCGGAT
LOC_Os10g17650
Os.46489.1.S1_at--909--8271Chr10:8594552..8594576 (25 bp)
GGCATCCTCCTCTTGATCAAATTGA
LOC_Os10g17650
Os.46489.1.S1_at--118--6111Chr10:8594575..8594599 (25 bp)
GAGTCGCCTATATATCAAGATGCCT
LOC_Os10g17650
Os.46489.1.S1_at--1041--2791Chr10:8594591..8594615 (25 bp)
AAGATGCCTTGATCATTGCTACCCT
LOC_Os10g17650
Os.46489.1.S1_at--814--3711Chr10:8594609..8594633 (25 bp)
CTACCCTACTACTACCTAGTTGTGA
LOC_Os10g17650
Os.46489.1.S1_at--706--331Chr10:8594637..8594661 (25 bp)
ATACACGCAGGATTGCATACCGAGC
LOC_Os10g17650
Os.46489.1.S1_at--518--9951Chr10:8594654..8594678 (25 bp)
TACCGAGCAGTGACCATTCATGTAT
LOC_Os10g17650
Os.46489.1.S1_at--549--2951Chr10:8594805..8594829 (25 bp)
AAGGCGCACATTTGGTCTGATTTTC
LOC_Os10g17650
Target Sequence 
TCATCTCTCTGAAGAATGCCCTCAAGGACGACAAGAGGACCAAATACCACAATGACTATCTTACAAACTTAGCAGACTCC
ATAAGGGAGGATGGTTGTGATGTTCGCGGGTATTTTGCATGGTCTCTTCTTGACAACTGGGAGTGGGCCGCTGGATACAC
CTCGAGATTCGGATTATACTACGTAGACTACAAGAACCGGAAGAGATACCCAAAGAATTCAGTGCAGTGGTTCAAGAATC
TCTTGGCATCCTCCTCTTGATCAAATTGAGTCGCCTATATATCAAGATGCCTTGATCATTGCTACCCTACTACTACCTAG
TTGTGATTTATACACGCAGGATTGCATACCGAGCAGTGACCATTCATGTATTCATTGATTGTGTAAAGAGATATCATGCA
TGGACTTGTTGTACATAATTCATAATATTCTTGCACCAAAAACTGAATAAACACAGATTGTAATAATAAAATAGATACAT
TTTGATGCTACAAGAAAAAGGCGCACATTTGGTCTGATTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46489.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis