Browse Element(s) Details


OsAffx.20544.1.S1_x_at

Description gb:NM_195689.1
DB_XREF= gi:37532737
TID=OsAffx.20544.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative disease resistance protein (OSJNBa0065C16.10), mRNA.
PROD=putative disease resistance protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1769011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g17640OsAffx.6684.1.S1_at11/1110+8585708..8585996hypothetical protein
LOC_Os10g17650Os.46489.1.S1_at11/1110+8588927..8594834Glycosyl hydrolase family 1 protein, expressed
LOC_Os10g17660Os.12777.1.S1_a_at11/1110+8596569..8597679Profilin A, putative, expressed
LOC_Os10g17670OsAffx.8300.1.S1_at11/1110+8603911..8605502hypothetical protein
LOC_Os10g17680Os.12777.1.S1_a_at11/1110+8605864..8606978Profilin A, putative, expressed
LOC_Os10g17690OsAffx.20544.1.S1_x_at11/1110+8608595..8611179NB-ARC domain containing protein, expressed
LOC_Os10g17700OsAffx.8299.1.S1_x_at11/1110+8614779..8615174retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g17710Os.41695.15.S1_s_at9/1110+8617020..8620555calcineurin-like phosphoesterase family protein, putative
LOC_Os10g17710Os.41695.2.S1_x_at5/1110+8617020..8620555calcineurin-like phosphoesterase family protein, putative
LOC_Os10g17710Os.41695.5.S1_x_at5/1110+8617020..8620555calcineurin-like phosphoesterase family protein, putative
LOC_Os10g17710Os.41695.3.S1_x_at5/1110+8617020..8620555calcineurin-like phosphoesterase family protein, putative
LOC_Os10g17724NANA10+8626237..8632696Zinc knuckle family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20544.1.S1_x_at--238--3631Chr10:8609126..8609150 (25 bp)
CTTGAAATCTCTGATCACTCTGCGT
LOC_Os10g17690
OsAffx.20544.1.S1_x_at--622--9691Chr10:8609112..8609136 (25 bp)
TCACTCTGCGTTCTTTTGATCTGGG
LOC_Os10g17690
OsAffx.20544.1.S1_x_at--1138--6411Chr10:8609035..8609059 (25 bp)
GATCTCAATCTCTGTTACTCTGGAA
LOC_Os10g17690
OsAffx.20544.1.S1_x_at--122--6291Chr10:8608978..8609002 (25 bp)
GATGTTTTGCGTTCTTCCCTTGAAA
LOC_Os10g17690
OsAffx.20544.1.S1_x_at--4--5531Chr10:8608906..8608930 (25 bp)
GAAAATGGCCTATGTTCTTTGAACC
LOC_Os10g17690
OsAffx.20544.1.S1_x_at--327--551Chr10:8608877..8608901 (25 bp)
ATCCCGCCATCTTCAGAGACTGGAG
LOC_Os10g17690
OsAffx.20544.1.S1_x_at--987--6191Chr10:8608853..8608877 (25 bp)
GATGGCGTACTGGTGGTTTTCCAAA
LOC_Os10g17690
OsAffx.20544.1.S1_x_at--55--4791Chr10:8608808..8608832 (25 bp)
GCTCCATGAGCTTCACGTCTTGAAA
LOC_Os10g17690
OsAffx.20544.1.S1_x_at--558--8871Chr10:8608760..8608784 (25 bp)
TGATGATATCACTCTTCTTGCACAA
LOC_Os10g17690
OsAffx.20544.1.S1_x_at--1065--5611Chr10:8608724..8608748 (25 bp)
GACAAACCTTGGATTGCGCATGCGA
LOC_Os10g17690
OsAffx.20544.1.S1_x_at--1100--5271Chr10:8608667..8608691 (25 bp)
GAAGGCATTCCCAGTTCTCAGATAC
LOC_Os10g17690
Target Sequence 
CTTGAAATCTCTGATCACTCTGCGTTCTTTTGATCTGGGGGAGAACTCGTTACATAATATCAGAAGTATCAGAGAGCTGA
CTAATCTGAAAGATCTCAATCTCTGTTACTCTGGAAAAAATGTAGTATCTAATATGGAGACATGGATTGATGTTTTGCGT
TCTTCCCTTGAAAAGCTTTCCAACCTCAAATATCTACATTTATATTGGCCTGGTACTTGTGAAAATGGCCTATGTTCTTT
GAACCCTCCATCCCGCCATCTTCAGAGACTGGAGATGGCGTACTGGTGGTTTTCCAAAGTTCCTAAGTGGATTGGAGGGC
TCCATGAGCTTCACGTCTTGAAACTTGCAGTGAAGGAGGTGTCAGATGATGATATCACTCTTCTTGCACAACTGCCTTCC
CTGACAAACCTTGGATTGCGCATGCGAGGAGCACCTAAGCAGAAGATAATTATCTATAAGAAGGCATTCCCAGTTCTCAG
ATAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20544.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis