Browse Element(s) Details


OsAffx.8300.1.S1_at

Description tigr:9638.m01461
TID=OsAffx.8300.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1767011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g17630Os.49402.1.S1_at10/1110+8576763..8579068B3 DNA binding domain containing protein, expressed
LOC_Os10g17640OsAffx.6684.1.S1_at11/1110+8585708..8585996hypothetical protein
LOC_Os10g17650Os.46489.1.S1_at11/1110+8588927..8594834Glycosyl hydrolase family 1 protein, expressed
LOC_Os10g17660Os.12777.1.S1_a_at11/1110+8596569..8597679Profilin A, putative, expressed
LOC_Os10g17670OsAffx.8300.1.S1_at11/1110+8603911..8605502hypothetical protein
LOC_Os10g17680Os.12777.1.S1_a_at11/1110+8605864..8606978Profilin A, putative, expressed
LOC_Os10g17690OsAffx.20544.1.S1_x_at11/1110+8608595..8611179NB-ARC domain containing protein, expressed
LOC_Os10g17700OsAffx.8299.1.S1_x_at11/1110+8614779..8615174retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g17710Os.41695.15.S1_s_at9/1110+8617020..8620555calcineurin-like phosphoesterase family protein, putative
LOC_Os10g17710Os.41695.2.S1_x_at5/1110+8617020..8620555calcineurin-like phosphoesterase family protein, putative
LOC_Os10g17710Os.41695.5.S1_x_at5/1110+8617020..8620555calcineurin-like phosphoesterase family protein, putative
LOC_Os10g17710Os.41695.3.S1_x_at5/1110+8617020..8620555calcineurin-like phosphoesterase family protein, putative
LOC_Os10g17724NANA10+8626237..8632696Zinc knuckle family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8300.1.S1_at--553--1571Chr10:8605393..8605417 (25 bp)
AGCTAGATCAGATTGGCACCATTTT
LOC_Os10g17670
OsAffx.8300.1.S1_at--814--5511Chr10:8604896..8604920 (25 bp)
GAAAAAGTCAGAGCCCAGAGGGATC
LOC_Os10g17670
OsAffx.8300.1.S1_at--551--3631Chr10:8604171..8604195 (25 bp)
CTTGCAGTTGCACCGATTGATTTTC
LOC_Os10g17670
OsAffx.8300.1.S1_at--852--51Chr10:8604156..8604180 (25 bp)
ATTGATTTTCTGACTTTCTGCGGGA
LOC_Os10g17670
OsAffx.8300.1.S1_at--439--3671Chr10:8604143..8604167 (25 bp)
CTTTCTGCGGGAAGATGAAGCCAAT
LOC_Os10g17670
OsAffx.8300.1.S1_at--1011--751Chr10:8604120..8604144 (25 bp)
ATGTCAGGGCACATCGAGCTACCGG
LOC_Os10g17670
OsAffx.8300.1.S1_at--1156--1551Chr10:8604104..8604128 (25 bp)
AGCTACCGGCAGCTAAGGTTGCCAA
LOC_Os10g17670
OsAffx.8300.1.S1_at--160--6691Chr10:8604087..8604111 (25 bp)
GTTGCCAAGAATTGCCGGACGGGAA
LOC_Os10g17670
OsAffx.8300.1.S1_at--180--8171Chr10:8604066..8604090 (25 bp)
GGAAAATTTTGCTCCTCATGTAGGA
LOC_Os10g17670
OsAffx.8300.1.S1_at--936--5351Chr10:8604004..8604028 (25 bp)
GAAGAGGAGCCCTTGCTTGGCCTCA
LOC_Os10g17670
OsAffx.8300.1.S1_at--1104--4311Chr10:8603994..8604018 (25 bp)
CCTTGCTTGGCCTCATATGTTGAGA
LOC_Os10g17670
Target Sequence 
AGCTAGATCAGATTGGCACCATTTTTAGGATTGGAAAGAAAAAGTCAGAGCCCAGAGGGATCAAGGAGGTAGGAGATGTG
GTCGCTGGAGGATTGGGACCTAGAGGTGGTCGCTGTTGGCAGCGATGCGGTGGAGGGGACATAGATGCCAACGGTGGNNN
NGANNNNNTGNTNNNNNCNGNNGNNGNNNGGNNNCNNGNNNCAANNANANNNANNNNNTNNAGGAGTGGTGTTCCTCGGT
TGAAGAGGACAGTGATGAAGCTTGCAGTTGCACCGATTGATTTTCTGACTTTCTGCGGGAAGATGAAGCCAATGTCAGGG
CACATCGAGCTACCGGCAGCTAAGGTTGCCAAGAATTGCCGGACGGGAAAATTTTGCTCCTCATGTAGGAACAAGCTGAG
AAGACCGAGAGCGCAAGATTGGGAGTGGAAGAGGAGCCCTTGCTTGGCCTCATATGTTGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8300.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis