Browse Element(s) Details


Os.36903.1.S1_at

Description gb:AK062400.1
DB_XREF= gi:32972418
TID=Os.36903.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36903 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0565A07.12 (P0565A07.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-102-E01, full insert sequence.
FL= gb:AK062400.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g193941/11Ribulose bisphosphate carboxylase small chain A, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g19370OsAffx.31810.1.S1_at11/1112+11239907..11257732DNA polymerase I family protein, expressed
LOC_Os12g19394Os.28218.1.S1_x_at11/1112+11259915..11275651Ribulose bisphosphate carboxylase small chain A, chloroplast precursor, putative, expressed
LOC_Os12g19394Os.28218.1.S1_at11/1112+11259915..11275651Ribulose bisphosphate carboxylase small chain A, chloroplast precursor, putative, expressed
LOC_Os12g19394Os.28133.1.S1_s_at10/1112+11259915..11275651Ribulose bisphosphate carboxylase small chain A, chloroplast precursor, putative, expressed
LOC_Os12g19394Os.28133.1.S1_x_at7/1112+11259915..11275651Ribulose bisphosphate carboxylase small chain A, chloroplast precursor, putative, expressed
LOC_Os12g19394Os.36903.1.S1_at1/1112+11259915..11275651Ribulose bisphosphate carboxylase small chain A, chloroplast precursor, putative, expressed
LOC_Os12g19420OsAffx.26050.13.S1_x_at5/1112+11283045..11283470NAD, putative
LOC_Os12g19430OsAffx.30475.9.S1_s_at8/1112+11285878..11286291ATP synthase epsilon chain, putative
LOC_Os12g19440OsAffx.7641.1.S1_at11/1112+11293171..11293621hypothetical protein
LOC_Os12g19450OsAffx.12179.1.S1_at1/1112+11296872..11299519hypothetical protein
LOC_Os12g19450Os.34295.1.S1_at1/1112+11296872..11299519hypothetical protein
LOC_Os12g19450OsAffx.12179.1.S1_x_at1/1112+11296872..11299519hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0015977biological_processcarbon utilization by fixation of carbon dioxide
GO:0009573cellular_componentribulose bisphosphate carboxylase complex (sensu Magnoliophyta)
GO:0016984molecular_functionribulose-bisphosphate carboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36903.1.S1_at--394--3434Chr10:5238245..5238269 (25 bp)
CAGAGGTTATTTTGGTCATTTATGC
NONE
Os.36903.1.S1_at--57--10351Chr07:7664968..7664992 (25 bp)
TTTATGCAAAAACCTGACAGATCAA
NONE
Os.36903.1.S1_at--621--5651Chr07:7664953..7664977 (25 bp)
GACAGATCAATGGATGCTAACATCA
NONE
Os.36903.1.S1_at--383--411Chr07:7664932..7664956 (25 bp)
ATCAGTGAACTCACGGTAGTGGCAT
NONE
Os.36903.1.S1_at--362--175Chr10:5238651..5238674 (24 bp)
ATTTTGTGTGGCATATCAGGGATCG
NONE
Os.36903.1.S1_at--32--391Chr07:7664847..7664871 (25 bp)
ATCAGGGATCGGACCAAATTTCAAT
NONE
Os.36903.1.S1_at--1022--9511Chr07:7664808..7664832 (25 bp)
TCTCTCTTCCATCAATGATGACCTT
NONE
Os.36903.1.S1_at--878--3191Chr07:7664796..7664820 (25 bp)
CAATGATGACCTTTTATCTTTGAAG
NONE
Os.36903.1.S1_at--681--10411Chr07:7664783..7664807 (25 bp)
TTATCTTTGAAGGTTCTAATCGTGA
NONE
Os.36903.1.S1_at--409--55511Chr12:11268805..11268829 (25 bp)
GAAACCCTGTATTTTATTAATCACG
LOC_Os12g19394
Os.36903.1.S1_at--924--131Chr07:7664674..7664698 (25 bp)
ATTAATCACGATTCATTATCATGAA
NONE
Target Sequence 
CAGAGGTTATTTTGGTCATTTATGCAAAAACCTGACAGATCAATGGATGCTAACATCAGTGAACTCACGGTAGTGGCATG
AGAGGGTGTGCAAATTTGATTCAATGGCATATAAGGAAAGAGCCAATTTTGTGTGGCATATCAGGGATCGGACCAAATTT
CAATGGCATATAAGGGATTCTCTCTTCCATCAATGATGACCTTTTATCTTTGAAGGTTCTAATCGTGACACGTCATCACC
AATGAGGATTGTTTGATGAAACATTTTGTTTGATGAAAACAACACATAGAAAATAGGGAAACCCTGTATTTTATTAATCA
CGATTCATTATCATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36903.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis